BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890100
Length=2565
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20920.1 | Symbols: | double-stranded RNA-binding domain (D... 1934 0.0
AT4G20910.1 | Symbols: HEN1, CRM2 | double-stranded RNA binding... 649 0.0
> AT4G20920.1 | Symbols: | double-stranded RNA-binding domain
(DsRBD)-containing protein | chr4:11193597-11197577 REVERSE
LENGTH=2734
Length=2734
Score = 1934 bits (1047), Expect = 0.0
Identities = 1171/1232 (95%), Gaps = 3/1232 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGGTGAGGAGAAGCAGACTCTTACTCCAAAGGAGATTATACATCAGAAGTTTGGT 60
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1 ATGGCGGGTGAGGAGAAGCAGACTCTTACTCCAAAGGAGATGATACTTCAGAAGTTTGGT 60
Query 61 GTTAAAGCAATTTATAGAATTGAGGAAGTTCATGTTTCTTCGAATGAATGCCTCTATCGT 120
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 GTTAAAGCAATTTACAGAATTGAGGAAGTTCATGTTTCTTCGAATGATTGCCTCTATCGT 120
Query 121 TGCCACTTGCAGCTACCAGAATTTTCTGTTGTATCAAATGTTTTCAAGAGAAAGAAGGAT 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 121 TGCCACTTGCAGCTACCAGAATTTTCTGTTGTATCAAATGTCTTCAAGAGAAAAAAGGAT 180
Query 181 TCCGAACAATCCGCTGCAGAATTGGCTCTCGAGAAGCTAGGAATTCAGCCTCAGgatgat 240
||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 TCCGAACAATCTGCTGCTGAATTGGCTCTCGAGAAGCTAGGAATTCAGTCTCAGGATGAT 240
Query 241 gatgatgatgatATAACTGTGGATGAAGCTTGGAATGATATCGTTGAACGCATTAAGTAT 300
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 GATGATGTTGATATAACTGTGGATGAAGCTTGGAATAATATCGTTGAACGCATTAAGTAT 300
Query 301 ATATTTTCTGATGAGTTCCTTTCAGCTGATCATCCTCTGGGAGGTCATCTTAGGGCGGCA 360
||||||||||||||||| ||||||| |||||||||||| |||||||| || |||||||||
Sbjct 301 ATATTTTCTGATGAGTTTCTTTCAGTTGATCATCCTCTAGGAGGTCACCTAAGGGCGGCA 360
Query 361 TTGCAAAGGGATGGTGAACGTTGCGGATCACTTCCTGTTTCTGTCATTGCGACATTTGAT 420
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 TTGCAAAGGGATGGCGAACGTTGCGGATCACTTCCTGTTTCTGTCATTGCTACATTTGAT 420
Query 421 GCAAAGATTAACAGTCGCTGTAAAGTGATTGATCCTTCTGTGGACTCAGATCCTATCTTG 480
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 421 GCAAAGATTAACAGTCGCTGTAAAGTGATTGATCCTTCTGTAGAATCAGATCCTATCTTG 480
Query 481 CTCATGTCCTATGTCATGAAGGCTGCAGCAAAGTTGCCGGACTACATTGTCGTGTCTCCG 540
|||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 481 CTCATGTCCTATGTCATGAAGGCTGCTGCAAAGTTGCCGGACTACATTGTTGTATCTCCG 540
Query 541 CATGTAGATTCACTACGAAGGAAAAAACCATACCCTCCAGCAATTATAAAAGCTCTGG-- 598
||||| |||||||| |||||||||||||| || |||||||||| ||| ||||| ||||
Sbjct 541 CATGTCGATTCACTCCGAAGGAAAAAACCGTATCCTCCAGCAACTATTAAAGCACTGGCT 600
Query 599 -CTACTCATGTGAAAAGCATAAAAGTTGAGGCTGTGCATATACAATGTACTGTTGGCGGT 657
|||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||
Sbjct 601 ACTACTCATGTGAAAAGCATAAAAGCTGAGGCTGTGCATTTACAATGTACCGTTGGCGGT 660
Query 658 GAAGAAGTTGTTAAGCCAGTCACTCTTGATATTTCATCAGGTCGGTATTACTTGGATATT 717
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GAAGAGGTTGTTAAGCCAGTCACTCTTGATATTTCATCAGGTCGGTATTACTTGGATATT 720
Query 718 ATTGCTGAAAAGCTTGGGTTGAAGGATGGCAGCCAAGTGATGATATCAAGGACTATTGGC 777
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATTGCTGACAAGCTTGGATTGAAGGATGGCAGCCAAGTGATGATATCAAGGACTATTGGC 780
Query 778 AAAACTTCCTCTGGCTATGAGTGTAGAGTATACGCTGCCATGCCTAAGTTGAAGTCTTTC 837
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
Sbjct 781 AAAACTTCCTCTGGCTATGAGTGTAGAGTATATGCTGCCATTCCTAAGTTGAAGTCTTCC 840
Query 838 GATAATTCATGGAAAGCCCGTGAAAAACGTCCAATTAATGAATCATCACATCTTGAAAAG 897
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 841 GATAATTCATGGAAAGCCCGTGAAAAACGTCCAATCATTGAATCATCACATCTTGAAAAG 900
Query 898 TCTCGGAATGCAAAAGCAAGTTTTGTTTGTGGTCTTGATGTTCACGGTGATGCGATTGTG 957
||||||||||||||||||||||||||||||||| | ||| |||||||||||||||| |||
Sbjct 901 TCTCGGAATGCAAAAGCAAGTTTTGTTTGTGGTGTAGATATTCACGGTGATGCGATCGTG 960
Query 958 GCATCTGTTGGTTACCCATGGAGGATATGTTGCGGTATGTCTCCTAATGGAATCTATAAA 1017
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 961 GCATCTGTTGGTTACCCATGGAGGATATGTTGCGGTATTTCTCCTAATGGAATCTATAAA 1020
Query 1018 CTATCCCGAGAAGCAATAATTGCTGCGCAGTTGCCTTTTTCATTCACTACAAAGTCTACT 1077
||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 1021 TTATCCCGAGAAGCGATAATAGCGGCGCAGTTACCTTTTTCATTCACTACAAAGTCTACT 1080
Query 1078 TGGAGAGGTCCATTCCCCAGGGAGATTCTCTGCATGTTCTGCCGTCAGCAACAACTAGCA 1137
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 1081 TGGAGAGGTCCATTCCCCAGGGAGATTCTCTGCATGTTCTGCCGCCAGCAACAACTGGTA 1140
Query 1138 GAACCCATTTTTACTTTATCTACTGCTCCTGTGAAACCAATGTCTTGCATATTAAGATCC 1197
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GAGCCCATTTTTACTATATCTACTGCTCCTGTGAAACCAATGTCTTGCATATTAAGATCC 1200
Query 1198 TACCAGAAGTTGAAAGACTCTGAATCTGATGA 1229
|||||||||||||||||||| |||| ||||||
Sbjct 1201 TACCAGAAGTTGAAAGACTCAGAATGTGATGA 1232
Score = 1378 bits (746), Expect = 0.0
Identities = 865/921 (94%), Gaps = 13/921 (1%)
Strand=Plus/Plus
Query 1209 GAAAGACTCTGAATCTGATGATAGCGAATATCAATATGTGAGCAAGGGAAAAGAGGAGAT 1268
||||||||| |||| |||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1254 GAAAGACTCAGAATGTGATGATAGCGAATATCAGTATACGAGCAAGGGAAAAGAGGAGAT 1313
Query 1269 ACCAGAATCAGGGACTGGATATAGATGTGAAGTGAAAATTCTCTCAAAGTCCCAGGATTT 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 ACCAGAATCAGGGACTGGATATAGATGTGAAGTGAAAATTCTCTCAAAGTCCCAGGATTT 1373
Query 1329 GGTTTTAGATTGCTCGTCGAAAAAGTTCTATGAGAAGGAAAACCATGCTATTCAAAATGC 1388
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1374 GGTTTTAGATTGCTCGTCCAGAAAGTTCTATGAGAAGGAAAACCATGCTATTCAAAATGC 1433
Query 1389 TTCATTGGATGCCCTCTCATGGTTAAGTAGGCTTTTCGACGAGGGGGATGTGGACCCACT 1448
||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1434 TTCGTTGAATGCCCTCTCATGGTTAAGTAGGCTTTTCGACGAGGGGGATGGGGACCCACT 1493
Query 1449 GCAACCATGTTATACA-AGTGAACACCTGGATATGGTATTTCAACAGAGGATCTTGATGA 1507
|||| ||||||||| | ||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1494 GCAAATATGTTATACGGA-TGATCACCTGGATGCGGTATTTCAACAGAGGATCTTGATGA 1552
Query 1508 AAGAGGCTGTTCCAAGGGGACATTTCCGAAATAGAGACGAAAGGAATGAATATGAGGACC 1567
||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||| |
Sbjct 1553 AAGAGGCTGTTCCAAAGGGACATTTCCGAAATAGAGACGAAATGAATCAATATGAGGATC 1612
Query 1568 AAATTCGTATTCAATCCATAACAAAGGGTTCCTTGGTTATCATATGCTATTCTGTGTATT 1627
|| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1613 AAGTTCGTATTCAAACCATAACAAAGGGTTCCTTGGTTAGCATATGCTATTCTGTGTATT 1672
Query 1628 TGGATGTAGATGCTGATTTTTCGA-GTGATGGTAAATCTAGAAAAGAACTCATCGAAAGC 1686
|||||||||||||||||||||| | | ||||||||||||| |||||||||||||||||||
Sbjct 1673 TGGATGTAGATGCTGATTTTTCAAAG-GATGGTAAATCTAAAAAAGAACTCATCGAAAGC 1731
Query 1687 AATGAAGAGATAGAGTTCGAGGTGGGGAATGGTTCTATGAATCCACATCTTGAATCAGTT 1746
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1732 AATGAAGAGATAGAGTTTGAGGTGGGGAATGGTTCTATGAATCCACATCTTGAAGCAGTT 1791
Query 1747 GTTACTCAGCTGGCTGTGGGCCAATATGCTCGTTTTTTAACTGATGCGCCTGCTGAAGAC 1806
|||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1792 GTTACTCAACTGGTTGTGGGCCAATATGCTCGTTTTTTAACTAATGCGCCTGCTGAAGAC 1851
Query 1807 TTGTTTGTGACTGCTGCCACTGGAACCCAGAGAGATCGTTCAG----AT-A--T--CGCA 1857
||||||||||||||||||||||| |||||||||||||||||| || | | ||||
Sbjct 1852 TTGTTTGTGACTGCTGCCACTGGTACCCAGAGAGATCGTTCACTTTTATCAGATGTCGCA 1911
Query 1858 GGTTTTGAATACTGTGTACGTTTGTTGGGAGTGAAAGGGCCAACAGAAAAACGAATTGAG 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1912 GGTTTTGAATACTGTGTACGTTTGTTGGGAGTGAAAGGGCCAACAGAAAAACGAATTGAG 1971
Query 1918 GCGGATTTTTTCAAACCTTCACTTTCAAAACAGCGTCTTGAATATGCAGTGAAACATATA 1977
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1972 GCGGATTTTTTCAAACCTTCACTTTCAAAACAGCGTCTTGAATATGTAGTGAAACATATT 2031
Query 1978 AAAGAATCGTCAGCTTCTACTCTGGTTGACTTTGGATGTGGATCTGGAAGTTTACTAGCC 2037
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2032 AAAGAATCGTCAGCTTCTACTCTGGTTGATTTTGGATGTGGATCTGGAAGTTTACTAGCA 2091
Query 2038 TCTTTACTTGACCATCCAACTTCACTTCAAACCATTGCTGGCGTTGACATCTCACAGAAG 2097
||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2092 TCTATACTTGACTGTCCAACTTCACTTCAAACCATTGCTGGCGTTGACATCTCACATAAG 2151
Query 2098 GGTCTTGTCCGTGCTGCTAAG 2118
||||| |||||||||||||
Sbjct 2152 AGTCTTACCCGTGCTGCTAAG 2172
Score = 654 bits (354), Expect = 0.0
Identities = 414/443 (93%), Gaps = 4/443 (1%)
Strand=Plus/Plus
Query 2117 AGGTCATTGAACACATGGAGGAAGATCAAGCCTGTCAATTCGGGAAAACAGTTCTAAGCT 2176
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 2292 AGGTCATTGAACACATGGAGGAGGATCAAGCCAGTCAATTCGGGAAAACAGTTCTAAGCT 2351
Query 2177 TGTTTCGCCCGAAACTTCTCATTGTCTCCACACCAAACATCGAGTACAACAAAAATTTCC 2236
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 2352 TGTTTCGCCCGAAACTTCTGATTGTCTCCACACCAAACATCGAGTACAACACAAATTTCC 2411
Query 2237 ACAAGTCTGCTCCTCCAAACCACCTAAAAAACAGTTCCATGTC---ACAGCTACCTAAAT 2293
| ||||||| |||||||||||||| ||||||||| |||||||| ||||||||| ||||
Sbjct 2412 ATAAGTCTGGTCCTCCAAACCACCCAAAAAACAGATCCATGTCTTCACAGCTACCAAAAT 2471
Query 2294 TCAGGAACCAAGACCACAAGTTCGAATGGACAAGGAAACAGTTTAAGCAGTGGGCATCTA 2353
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2472 TCAGGAACCAAGACCACAAGTTTGAATGGACAAGGAAACAGTTTAAGCAGTGGGCATCTA 2531
Query 2354 AGCTCGCTAAACGCCATAACTACAGCGTCTACTTTAGCGGTGTTGGTGAGTCTGGTAAAG 2413
| |||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||
Sbjct 2532 AACTCGCTAAACGCCACAACTACAGCGTCTATTTTAGCGGTGTTGGTGGGTCTGGTAAAG 2591
Query 2414 CAGATCCCGGGTTTGCTTCTCAGATTGCTGTTTTCAGACGGAAATCTTTGTCCAACGTTG 2473
||| ||||||||||||||||| |||| |||||| ||||||| ||||||||||||| | |
Sbjct 2592 GAGACCCCGGGTTTGCTTCTCAAATTGTTGTTTTTAGACGGATATCTTTGTCCAACATAG 2651
Query 2474 TGGAGAAGGTCTCAGAAGGCTCGATGCAGCCTTATAAAGTCATATGGGAATGGTCAA-GA 2532
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||
Sbjct 2652 TGGAGAAGGTCTCAGAAGGCTCGATGCAGCCTTATAAAATCATATGGAAATGGTCAAAGA 2711
Query 2533 GGAAATGGAGACAAAAAGACTAA 2555
||||||||||| |||||||||||
Sbjct 2712 GGAAATGGAGAGAAAAAGACTAA 2734
> AT4G20910.1 | Symbols: HEN1, CRM2 | double-stranded RNA binding
protein-related / DsRBD protein-related | chr4:11186084-11190691
REVERSE LENGTH=3125
Length=3125
Score = 649 bits (351), Expect = 0.0
Identities = 723/894 (81%), Gaps = 59/894 (7%)
Strand=Plus/Plus
Query 108 ATGCCTCTATCGTTGCCACTTGCAGCTACCAGAATTTTCTGTTGTATCAAATGTTTTCAA 167
||| |||||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 260 ATGTCTCTATCGTTGCCACTTGCAGCTACCTGAATTTTCTGTTGTGTCAAATGTCTTCAA 319
Query 168 G-AGAAAGAAGGATTCCGAACAATCCGCTGCAGAATTGGCTCTCGAGAAGCTAGGAATTC 226
| || ||||||||||| |||||||| ||||| ||||||||||| || |||||||| ||||
Sbjct 320 GAAG-AAGAAGGATTCTGAACAATCTGCTGCTGAATTGGCTCTTGACAAGCTAGGCATTC 378
Query 227 AG-CCTCAGgatgatgatgatgatgatATAACTGTGGATGAAGCTTGGAATGATATCGTT 285
| |||| | || |||||||| | | ||||||||||||||| || |||| || |||
Sbjct 379 -GCCCTC---A-GA--ATGATGAT-CT-T-ACTGTGGATGAAGCTAGGGATGAAATTGTT 428
Query 286 GAACGCATTAAGTATATATTTTCTGATGAGTTCCTTTCAGCTGATCATCCTCTGGGAGGT 345
| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
Sbjct 429 GGACGCATTAAGTATATATTTTCTGATGAGTTTCTTTCAGCTGAGCATCCTCTGGGAGCT 488
Query 346 CATCTTAGGGCGGCATTGCAAAGGGATGGTGAACGTTGCGGATCACTTCCTGTTTCTGTC 405
|| ||||| |||||||||| ||| |||||||||||||| |||||| |||| |||||||||
Sbjct 489 CACCTTAGAGCGGCATTGCGAAGAGATGGTGAACGTTGTGGATCAGTTCCCGTTTCTGTC 548
Query 406 ATTGCGACATTTGATGCAAAGATTAACAGTCGCTGTAAAGTGATTGATCCTTCTGTGGAC 465
||||| ||| |||||||||||||||||||||| |||||| | || |||||||||||||
Sbjct 549 ATTGCTACAGTTGATGCAAAGATTAACAGTCGTTGTAAAATTATCAATCCTTCTGTGGAG 608
Query 466 TCAGATCCTATCTTG-CTCATGTCCTATGTCATGAAGGCTGCAGCAAAGTTGCCGGACTA 524
||||||||| ||||| | ||| |||||||| ||||||||||| ||||||||| | |||||
Sbjct 609 TCAGATCCTTTCTTGGC-CATTTCCTATGTTATGAAGGCTGCTGCAAAGTTGGCAGACTA 667
Query 525 CATTGTCGTGTCTCCGCATGTAGATTCACTACGAAGGAAAAAACCATACCCTCCAGCAAT 584
|||||| | |||||||||| || || | |||||||||| |||||||| ||| |||
Sbjct 668 CATTGTTGCATCTCCGCATG--GACTC-C---GAAGGAAAAATGCATACCCTTCAGAAAT 721
Query 585 TATAAAAGCTCTGGCTACTCATGT----GA------A-A-AGCATAAAAGTTGAGGCTGT 632
| |||| || ||||||||||| || | | |||| | |||| | ||||||
Sbjct 722 CGTGGAAGCACTAGCTACTCATGTATCTGATTCCCTACATAGCAGAGAAGTCGCGGCTGT 781
Query 633 GCATATACAATGTACTGTTGGCGGTGAAGAAGTTGTTAAGCCAG-TCACTCTTGATATTT 691
|||||| ||||| | || ||| ||||||||| || || | |||||| | ||||
Sbjct 782 ATATATACCATGTA-T-----CGATGAGGAAGTTGTTGAGTTAGAT-ACTCTTTACATTT 834
Query 692 CATCAGGTCGGTATTACTTGGATATTATTGCTGAAAAGCTTGGGTTGAAGGATGGCAGCC 751
||||| ||| |||||||||||| ||||||||||| ||| || ||||| ||||||| ||
Sbjct 835 CATCAAACCGGCATTACTTGGATAGTATTGCTGAAAGGCTCGGATTGAAAGATGGCAACC 894
Query 752 AAGTGATGATATCAAGGACTATT-GGCAAAACTTCCTCTGGCTATGAGTGTAGAGTATAC 810
||||||||||||| |||| | || |||||| |||||| ||||| |||||||||| | |||
Sbjct 895 AAGTGATGATATCCAGGA-TGTTTGGCAAAGCTTCCTGTGGCTCTGAGTGTAGATTGTAC 953
Query 811 GCTGCCATGCCTAAGTTGAAGT-CTTTCGATAATTCATG-GAAAGCC-CGTGAAAAACGT 867
||| || || ||| |||| ||| |||||||||| || ||| | || | | |
Sbjct 954 TCTGAGATTCCAAAG---AAGTACTTG-GATAATTCATCAGAT-GCCTC-TGGTA--CTT 1005
Query 868 CCAATTAATGAATCATCACATCTTG-AAAAGTCTCGGAATGCAAAAGCAAGTTTTGTTTG 926
| ||| || || ||||| ||| ||| |||| |||||||||||| |||||||| ||||
Sbjct 1006 CAAATGAA-GACTCATCTCATATTGTAAAA-TCTCGGAATGCACGAGCAAGTTACATTTG 1063
Query 927 TGGTCTTGATGTTCACGGTGATGCGAT-TGTGGCATCTGTTGGTTACCCATGGA 979
||||| ||| ||||||| ||||| || | |||||||||||||||||| |||||
Sbjct 1064 TGGTCAAGATATTCACGGGGATGCAATCT-TGGCATCTGTTGGTTACCGATGGA 1116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127323701334
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5