BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890114
Length=567
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20780.1 | Symbols: CML42 | calmodulin like 42 | chr4:111331... 883 0.0
> AT4G20780.1 | Symbols: CML42 | calmodulin like 42 | chr4:11133186-11133970
REVERSE LENGTH=785
Length=785
Score = 883 bits (478), Expect = 0.0
Identities = 546/577 (95%), Gaps = 11/577 (2%)
Strand=Plus/Plus
Query 1 ATGGAGAGT---AACAACGAGAAGAAGAAAGTTTCAAGACAATCATCATCCTTCAGACTA 57
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 87 ATGGAGAGTAACAACAACGAGAAGAAGAAAGTTGCAAGACAATCATCATCCTTCAGACTA 146
Query 58 CGAAGCCCAAGCCTAAACGCACTTCGTCTCCAACGAATCTTCGACTTATTCGACAAAAAC 117
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 147 CGTAGCCCAAGCCTAAACGCACTTCGTCTCCAACGAATCTTCGACTTATTCGACAAAAAC 206
Query 118 GGCGACGGATTCATTACCGTTGAAGAGCTAAGCCAAGCTCTATCACGTCTCGGTCTCAAC 177
|||||||||||||| ||||| ||||||||||||||||||||| ||||||| |||||||||
Sbjct 207 GGCGACGGATTCATAACCGTCGAAGAGCTAAGCCAAGCTCTAACACGTCTTGGTCTCAAC 266
Query 178 GCTGATCTCTCCGATCTCAAATCCACCGTTGAATCCTACATTCAACCTGGTAACACTGGT 237
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 267 GCTGATCTCTCCGATCTCAAATCCACCGTTGAATCATACATCCAACCTGGTAACACTGGT 326
Query 238 CTCAATTTCGACGATTTCTCTTCTCTTCACAAAACACTCGACGATTCTTTCTTCGGTGGA 297
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 CTCAATTTCGATGATTTCTCTTCTCTTCACAAAACACTCGACGATTCTTTCTTCGGTGGA 386
Query 298 GCTTGTGGA-GA--AGAAAACGAAGAT--T-CTTCTTCCCCCGCCGAGGATGAATCGGAT 351
||||||||| || ||||||||||||| | |||||||| | || || |||||||||||
Sbjct 387 GCTTGTGGAGGAGGAGAAAACGAAGATGATCCTTCTTCCGCAGCTGAAAATGAATCGGAT 446
Query 352 CTCGCGGAGGCGTTTAAGGT-TTTCGATGAGAACGGTGATGGATTCATCTCCGCTAGGGA 410
||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||| ||
Sbjct 447 CTCGCCGAGGCGTTTAAGGTGTTT-GATGAGAACGGTGATGGATTCATCTCCGCTAGAGA 505
Query 411 ATTGCAAACGGTTCTGAAGAAACTTGGGTTACCTGAAGGTGGAGAGATGGAGAGAGTGGA 470
| ||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 506 ACTGCAAACTGTTCTGAAGAAACTTGGTTTACCTGAAGGTGGAGAAATGGAGAGAGTGGA 565
Query 471 GAAGATGATCGTTTCCGTTGACCGGAATCAAGATGGTCGCGTTGACTTTTTTGAATTCAA 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 GAAGATGATCGTTTCCGTTGACCGGAATCAAGATGGTCGCGTTGACTTTTTTGAATTCAA 625
Query 531 GAACATGATGCGTACTGTTGTCATCCCTTCTTCTTGA 567
|||||||||||||||||||||||||||||||||||||
Sbjct 626 GAACATGATGCGTACTGTTGTCATCCCTTCTTCTTGA 662
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27226907674
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5