BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890125
Length=876
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20410.1 | Symbols: GSNAP, GAMMA-SNAP | gamma-soluble NSF at... 1474 0.0
> AT4G20410.1 | Symbols: GSNAP, GAMMA-SNAP | gamma-soluble NSF
attachment protein | chr4:11013895-11016576 REVERSE LENGTH=1202
Length=1202
Score = 1474 bits (798), Expect = 0.0
Identities = 850/876 (97%), Gaps = 0/876 (0%)
Strand=Plus/Plus
Query 1 ATGTCTTCGGATCCTGAGAAAATGATGTCCAAAGCCGACAAAATGACAAAGCTCACGCTT 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 ATGTCTTCGGATCCTGACAAAATGATGTCCAAAGCCGACAAAATGACAAAGCTCACGCTT 182
Query 61 ACTAGATGGAGTGCTGATTGGAGAGGTGCTACTGAGTTGTATGAGCAAGCAGCCAATGGG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 183 ACTAGATGGAGTGCTGATTGGAGAGGTGCTACTGAGTTGTATGAGCAAGCAGCAAATGGG 242
Query 121 TTTAGAGCATCAAACAAATATGAGAAAGCTAAAGTGGCTCTCGAGAAAGCTTCAAAAGGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 TTTAGAGCATCAAACAAATATGAGAAAGCTAAAGTGGCTCTCGAGAAAGCTTCAAAAGGA 302
Query 181 CAAGAGATGCAAGCTTCTCCCTGGGATGCTGCAAAGCATATGGAGTCTGCTGCTGCTTTA 240
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 303 CAAGAGATGCAAGCTTCTCCTTGGGATGCTGCAAAGCATATGGAGTCTGCTGCTGCCTTA 362
Query 241 GCACAGAAACTAAGTATTTGGAATGAAGTTGCTGATTTTTATAGAAAGGCGTCTGAGCTG 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 363 GCACAGAAGCTAAGTATTTGGAATGAAGTTGCTGATTTTTATAGAAAGGCGTCGGAGCTG 422
Query 301 TATGTTGAGTGTGGAAGGGCACAACCCGCATCAGATGCTCTTGGAAAAGCTGCTCGTGCT 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 423 TATGTTGAGTGTGGAAGGGCACAACCCGCATCAGATGCTCTTGGAAAGGCTGCCCGTGCT 482
Query 361 TTGGAAGATGTCAAACCAGATGACGCCATCCAACTATACACTGATGCATGTGAAATTCTT 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 483 TTGGAAGATGTCAAACCAGATGACGCCATCCAACTATACACTGATGCTTGTGAAATTCTT 542
Query 421 GAAGAGGATGGGAGGGACCAAATGGCCTTTGATCTGTACCGTGCTTGTGCTAATGTCTAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 GAAGAGGATGGGAGGGACCAAATGGCCTTTGATCTGTACCGTGCTTGTGCTAATGTCTAC 602
Query 481 ATAAAGCTCGAGAAGTTCACAGATGCTGCAACCTTTTTCTTAAGATTGGGTGTTGCTGCT 540
|| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 603 ATTAAGCTTGAGAAGTTCACAGATGCTGCAACCTTTTTCTTAAGATTGGGTGTAGCTGCT 662
Query 541 GATAAGTGCGATGCCACAAATAGCCAGTGTAAGGCCTATCTCAGTGCAATCATCTTATAT 600
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 GATAAGTGTGATGCGACAAATAGCCAGTGTAAGGCCTATCTCAGTGCAATCATCTTATAT 722
Query 601 CTGTATGCTCATGACCTGCAACAGGCAGAAAAATGCTACAACGACTGTTCTCAGATCGAT 660
||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 723 CTGTATGCTCACGACCTGCAGCAGGCAGAAAAATGCTACAATGACTGTTCTCAGATTGAT 782
Query 661 GCTTTTCTGAAGAGTGATCAGAGCCGAAGTGCTAGTAGACTTCTCACAGCCTATAATGAA 720
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 783 GCCTTTCTGAAGAGTGATCAGAGCCGAAGTGCTAGTAGACTTCTCACCGCCTATAATGAA 842
Query 721 GGTGACATTGAAGAAATCAAGAAGGTGGCGAGTTCAAGCACTGTCTCCAATTTGGATCAT 780
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 843 GGTGACATTGAAGAAATCAAGAAGGTGGCGAGTGCAAGCACTGTCTCGAATTTGGATCAT 902
Query 781 ATGATCATCAAGTTGGCTAGAAAGTTACCCACTGGAGATGTTACTACAATTCAGATGAAC 840
||||| |||||||||||||| ||| |||||||||||||||||||| ||||||||||||||
Sbjct 903 ATGATTATCAAGTTGGCTAGGAAGCTACCCACTGGAGATGTTACTGCAATTCAGATGAAC 962
Query 841 ACTAATGACGATCTAGACGAGGATGATCTCACTTAA 876
||||||||||||||||||||||||||||||||||||
Sbjct 963 ACTAATGACGATCTAGACGAGGATGATCTCACTTAA 998
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42749259097
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5