BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg890140

Length=636
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G20280.1 | Symbols: TAF11 | TBP-associated factor 11 | chr4:...   933    0.0  


> AT4G20280.1 | Symbols: TAF11 | TBP-associated factor 11 | chr4:10953547-10954974 
FORWARD LENGTH=1110
Length=1110

 Score =  933 bits (505),  Expect = 0.0
 Identities = 599/642 (93%), Gaps = 15/642 (2%)
 Strand=Plus/Plus

Query  1    ATGAAGCATTCAAAGGATCCGTTTGAGGCAGCAATTGAGGAGGAACAAGAGGAATCGCCA  60
            |||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||
Sbjct  168  ATGAAGCATTCAAAGGATCCGTTTGAAGCAGCGATTGAGGAAGAGCAAGAGGAATCGCCA  227

Query  61   CCGGAATCACCCGTTGGCGGCGGCggaggaggaggaggaggTGATGGTAGTGAAGAGGGA  120
            |||||||||||||||      |||   ||||||||||||||||||||||||||||| |||
Sbjct  228  CCGGAATCACCCGTT------GGC---GGAGGAGGAGGAGGTGATGGTAGTGAAGACGGA  278

Query  121  CGAATTGAAATTGACCAGACTCAAGAAGAAGATGAGAGGCCTGTGGATGTTCGCCGTCCG  180
            ||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct  279  CGAATTGAAATCGACCAGACTCAAGATGAAGATGAGAGACCTGTGGATGTTCGCCGTCCG  338

Query  181  ATGAAGAAGGCTAAAACCTCCGTTGTTGTTACTGAAGCTAAGAACAAAGAT---GAT---  234
            |||||||| ||||||||||| ||||||||||||||||||||||||||||||   |||   
Sbjct  339  ATGAAGAAAGCTAAAACCTCTGTTGTTGTTACTGAAGCTAAGAACAAAGATAAAGATGAA  398

Query  235  GATGACGAAGAAGAGGAAGAGAACATGGAAGTTGAGCTCACTAAATATCCAACTAGTTCT  294
            ||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct  399  GATGATGAAGAAGAGGAAGAGAATATGGATGTTGAGCTTACTAAATATCCAACTAGTTCT  458

Query  295  GATCCTGCTAAAATGGCCAAAATGCAAACCATTTTATCACAATTCACTGAGGATCAGATG  354
            |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct  459  GATCCTGCTAAAATGGCCAAAATGCAAACCATATTATCGCAATTCACTGAGGATCAGATG  518

Query  355  AGTAGATATGAATCTTTTAGGAGATCTGCACTTCAAAGACCACAAATGAAGAAGTTACTG  414
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct  519  AGTAGATATGAATCTTTTAGGAGATCTGCACTTCAAAGACCACAGATGAAGAAGTTATTG  578

Query  415  ATAGGTGTCACTGGGAGTCAGAAGATTGGTATGCCAATGATTATTGTTGTGTGTGGTATT  474
            |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  579  ATAGGTGTCACTGGTAGTCAGAAGATTGGTATGCCAATGATTATTGTTGCGTGTGGTATT  638

Query  475  GCTAAGATGTTTGTTGGTGAACTTGTGGAAACAGCTCGAGTTGTTATGGCGGAAAGGAAA  534
            || |||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct  639  GCAAAGATGTTCGTTGGTGAACTCGTTGAAACAGCTCGAGTTGTTATGGCGGAAAGGAAA  698

Query  535  GAATCAGGACCTATCAGACCTTGTCATATCAGGGAGTCCTATCGGAGACTGAAGCTCGAA  594
            |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct  699  GAATCAGGACCTATCAGACCTTGTCATATCAGGGAGTCTTATCGGAGACTAAAGCTCGAA  758

Query  595  GGAAAAGTGCCTAAAAGATCAGTTCCACGGCTCTTCCGCTAG  636
            ||||||||||||||||||||||||||||| || |||||||||
Sbjct  759  GGAAAAGTGCCTAAAAGATCAGTTCCACGCCTTTTCCGCTAG  800



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30693063817


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5