BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg890146

Length=246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G20150.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   398    2e-110


> AT4G20150.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: mitochondrion, plasma membrane, mitochondrial 
respiratory chain complex I, respiratory chain complex I; 
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth 
stages; Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi 
- 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 
(source: NCBI BLink). | chr4:10888262-10889597 REVERSE LENGTH=610
Length=610

 Score =  398 bits (215),  Expect = 2e-110
 Identities = 235/245 (96%), Gaps = 0/245 (0%)
 Strand=Plus/Plus

Query  1    ATGCCTCTAAGTGCGACAATGGTCGGAGCTTTATTGGGTCTCGGAACCCAGATGTACTCC  60
            |||||| |||||||||||||||||||||||||  |||||||||| |||||||||||||||
Sbjct  98   ATGCCTATAAGTGCGACAATGGTCGGAGCTTTGCTGGGTCTCGGTACCCAGATGTACTCC  157

Query  61   AACGCCCTCCGCAAGCTCCCTTATATGCGTCATCCGTGGGAGCATGTGGTGGGTATGGGA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  158  AACGCCCTCCGCAAGCTCCCTTATATGCGTCATCCGTGGGAGCATGTGGTGGGTATGGGA  217

Query  121  CTTGGTGCTGTGTTCGCGAACCAGCTTGTGAAATGGGATGTGAAGCTTAAGGAAGATCTC  180
            |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct  218  CTTGGTGCTGTGTTTGCGAACCAGCTCGTGAAATGGGATGTGAAGCTTAAGGAAGATCTT  277

Query  181  GATGTGATGCTTGCTAAAGCCAGAGCTGCTAATGAGCGCCGTTACTTTGATGAAGATCGG  240
            ||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct  278  GATGTGATGCTCGCTAAGGCTAGAGCTGCTAATGAGCGCCGTTACTTTGATGAAGATCGG  337

Query  241  GATTA  245
            |||||
Sbjct  338  GATTA  342



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11159440278


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5