BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg890182

Length=774
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G19900.1 | Symbols:  | alpha 1,4-glycosyltransferase family ...   597    5e-170


> AT4G19900.1 | Symbols:  | alpha 1,4-glycosyltransferase family 
protein | chr4:10789096-10791433 REVERSE LENGTH=1983
Length=1983

 Score =  597 bits (323),  Expect = 5e-170
 Identities = 357/374 (95%), Gaps = 0/374 (0%)
 Strand=Plus/Plus

Query  1    ATGTTGAGATCACGGCGTTCACGTTCCCGTCACGGCGCACAAGCTTGCGCCGTTATGTCT  60
            |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  1    ATGTTGAGGTCACGGCGTTCACGTTCCCGTCACGGTGCACAAGCTTGCGCCGTTATGTCT  60

Query  61   GCCGttcttcttctcgcttccgtctctcttctctacactcgtctctcactcttctcatct  120
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  61   GCCGTTCTTCTTCTCGCTTCCGTCTCACTTCTCTACACTCGTCTCTCACTCTTCTCATCT  120

Query  121  cactcGCCGATTCACCTCCGCTCCGGCTCCAGCGAAGACGCTGTTTTGTTCCCGGATTCT  180
            |||||||||| |||||||||||| ||||||||||||||| | ||||||||||| ||||||
Sbjct  121  CACTCGCCGAATCACCTCCGCTCTGGCTCCAGCGAAGACACAGTTTTGTTCCCTGATTCT  180

Query  181  CTCCTCGTCTCAGATTCCGACGTTGAAACCACCGGCGGAGGAGGAAGAGGATCCACTACC  240
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GTCCTCGTCTCAGATTCCGACGTTGAAACCACCGGCGGAGGAGGAAGAGGATCCACTACC  240

Query  241  TCAACCGAAGACAGAATCGACGAGCACGACGATGCGATTGAAGACGACGGCGGTTCTAAT  300
            |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||
Sbjct  241  TCAACCGAAGACAGAATCGACGAGCACGACGATGCGATCGAAGACGACGGCGTTTCGAAT  300

Query  301  GAGGAAGATGAGAATCAGGACGCAGAGCAAGAGCAAGAAGTGGATCTTAATCGGAACAAG  360
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  GAGGAAGATGAGAATCAAGACGCAGAGCAAGAGCAAGAAGTGGATCTTAATCGGAACAAG  360

Query  361  GGTGGTGcttcttc  374
            | || | | |||||
Sbjct  361  GCTGCTTCATCTTC  374


 Score =  239 bits (129),  Expect = 3e-62
 Identities = 138/142 (97%), Gaps = 2/142 (1%)
 Strand=Plus/Plus

Query  544   TATTTTGCATACCCTGCAATAGAAGATGAGAAG-TCGCAGCAAGACGAATCGTTCAAGAA  602
             |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct  1750  TATTTTGCATACCCTGCAATAGAAGATGAG-AGATCGCAGCAAGACGAATCGTTCAAGAA  1808

Query  603   GATCCTCAACGAGTCCTTAACGTTCCATTTCTGGAACAGCGTAACTTCCTCACTGATCCC  662
             ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1809  GATACTCAATGAGTCCTTAACGTTCCATTTCTGGAACAGCGTAACTTCCTCACTGATCCC  1868

Query  663   TGAACCTGAGAGCCTTGTGGCT  684
             ||||||||||||||||||||||
Sbjct  1869  TGAACCTGAGAGCCTTGTGGCT  1890


 Score =  135 bits (73),  Expect = 5e-31
 Identities = 100/113 (88%), Gaps = 2/113 (2%)
 Strand=Plus/Plus

Query  432   TGGTGAGATCAAGAGAGGTGAACGTAAGACATTAGACGATGATAAGAAAATCGAGAG-GA  490
             ||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| ||
Sbjct  894   TGGTGAGATCAAGAGAGGTGAACGTAAGACATTAGACAATGATGAGAAAATTGAGAGAGA  953

Query  491   AGGAACAGACGAATACAAAATTTGAGGGGAAGCTTGATGAGGTTACAGAACAT  543
              |||||||| ||||    ||| |||| |||||| |||||||||||||||||||
Sbjct  954   -GGAACAGAAGAATGTGGAATCTGAGAGGAAGCATGATGAGGTTACAGAACAT  1005



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37625376103


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5