BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg890188

Length=234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G20950.1 | Symbols:  | Phosphofructokinase family protein | ...   265    2e-70


> AT1G20950.1 | Symbols:  | Phosphofructokinase family protein 
| chr1:7297239-7301415 REVERSE LENGTH=2152
Length=2152

 Score =  265 bits (143),  Expect = 2e-70
 Identities = 178/194 (92%), Gaps = 5/194 (3%)
 Strand=Plus/Plus

Query  1    GTTGGAATTGTGTTTTGTGGAAGGCAAGCTCCTGGTGGACACAATGTGATCTGGGGTCTT  60
            |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct  344  GTTGGAATTGTGTTTTGTGGAAGGCAAGCTCCAGGTGGACATAATGTGATCTGGGGTCTT  403

Query  61   TTCGAAGCTCTCAAGGTGCACAACGCAAAAAGCACTTTGCTAGGCTTTCTG--TG-TTCC  117
            ||||| |||||||||||||||||||||||||||||||||||||| ||| ||  || ||||
Sbjct  404  TTCGAGGCTCTCAAGGTGCACAACGCAAAAAGCACTTTGCTAGGATTTTTGGGTGGTTCC  463

Query  118  GAAGGG-CTATTTGGACAAAATACTCTGGAGATTACAGATGATATACTTCAGATTTCCAA  176
            || ||| ||||||| |||||| ||||| ||||||||||||||||||||||||| || |||
Sbjct  464  GA-GGGTCTATTTGCACAAAAGACTCTAGAGATTACAGATGATATACTTCAGACTTACAA  522

Query  177  AAACCAAGGTAGTT  190
            |||||||||| |||
Sbjct  523  AAACCAAGGTGGTT  536



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10556227290


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5