BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890189
Length=2175
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19890.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 3155 0.0
AT4G19900.1 | Symbols: | alpha 1,4-glycosyltransferase family ... 226 8e-58
> AT4G19890.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr4:10786948-10789053 REVERSE LENGTH=2106
Length=2106
Score = 3155 bits (1708), Expect = 0.0
Identities = 1923/2027 (95%), Gaps = 13/2027 (1%)
Strand=Plus/Plus
Query 154 AGATTGATCTCTTCCGATCACGAATCCAGTGATGTGTCTCCTCCTTCTTCTTCTCCATCA 213
|||||||||||||||||||| |||||||||||| ||||| || | ||||||||||||||
Sbjct 88 AGATTGATCTCTTCCGATCATGAATCCAGTGATTTGTCT-CT--TCCTTCTTCTCCATCA 144
Query 214 TCGCCACCTTCTCAATCTCTCGTGAAATCAGTCTGTTCATTGGTCTATAAC-TCCTATCT 272
||| |||||||||||| |||||| ||||| |||||||||||||| | | || ||||||||
Sbjct 145 TCGTCACCTTCTCAATGTCTCGTTAAATCGGTCTGTTCATTGGTTTGT-ACTTCCTATCT 203
Query 273 TCGTCAAAACCATGTCATA-CAATCCCCACACCGTGTCAATCTCGACTTCGATGCTAATT 331
|||||||||||||||| || | |||||||||||| |||||||||||||||||||||||||
Sbjct 204 TCGTCAAAACCATGTCGTATC-ATCCCCACACCGAGTCAATCTCGACTTCGATGCTAATT 262
Query 332 CTCTTACCCACGAGCAAGCGATTACTGTGGTGGCTTCACTCGCGAGCGAATCTGGTTCGA 391
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 263 CTCTTACCCACGAGCAAGCGATCACTGTGGTGGCTTCACTCGCGAGCGAATCTGGTTCGA 322
Query 392 TGGTTGCTCTTTGTTTCTTCTATTGGGCAGTGGGTTTCGAAAAGTTCCGACATTTCATGA 451
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 TGGTTGCTCTGTGCTTCTTCTATTGGGCAGTGGGTTTCGAAAAGTTCCGACATTTCATGA 382
Query 452 GATTGTATCTCGTAACTGCTGATTCTTTGATTGCTAATGGAAATTTGCAGAAAGCTCACG 511
|||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||
Sbjct 383 GATTGTATCTCGTAACCGCTGATTCTTTGCTTGCTAATGGGAATTTGCAGAAAGCTCACG 442
Query 512 AGGTAATGCGATGTATGCTTAGAAATTTCTCGGAGATTGGGAGATTAAACGAGGCTGTTG 571
|||| |||||||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 443 AGGTTATGCGATGCATGCTTAGAAATTTCTCGGAGATTGGGAGATTGAATGAGGCTGTTG 502
Query 572 GTATGGTTATGGATATGCAGAATCAGGGATTATCACCTAGCTCGATAACTATGAATTGTG 631
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 503 GTATGGTTATGGATATGCAGAATCAGGGGTTAACACCTAGCTCGATAACTATGAATTGTG 562
Query 632 TTCTTGAGATTG-CGATTGAGTCAGGTTTGATTGATTATGCAGAGAATGTGTTCGACGAA 690
|||| || |||| || |||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 563 TTCTCGAAATTGCCG-TTGAGTTGGGTTTGATTGAATATGCAGAGAATGTGTTCGACGAA 621
Query 691 ATGTCTGTGAGAGGAGTTTG-TCCGGATTCTAGTTCTTTTAAGCTTATGGTTATTGGTTG 749
|||||||||||||||| | | ||||||||||||||||| |||||||||||||||||||||
Sbjct 622 ATGTCTGTGAGAGGAG-TAGTTCCGGATTCTAGTTCTTATAAGCTTATGGTTATTGGTTG 680
Query 750 TTTTAGAGATGGTAAGATTCAGGAAGCTGATAGATGGTTAAGC-GGAATGATTCAAAGAG 808
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 681 TTTTAGAGATGGTAAGATTCAGGAAGCTGATAGATGGTTAA-CTGGAATGATTCAAAGAG 739
Query 809 GATTTATTCCTGATAACGCTACATGTACCTTGATTCTTAGTGCATTGTGTGAGAATGGTT 868
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 740 GATTTATTCCTGATAACGCTACATGTACCTTGATTCTCACTGCATTGTGTGAGAATGGTT 799
Query 869 TAGTAAATAGAGCGATTTGGTATTTCCGGAAGATGATTGATTTAGGTTTTAAACCAAACT 928
|||| ||||||||||||||||||||||| |||||||||||| |||| ||||| |||||||
Sbjct 800 TAGTGAATAGAGCGATTTGGTATTTCCGTAAGATGATTGATCTAGGGTTTAAGCCAAACT 859
Query 929 TGATTAATTTTACGTCTTTGATTGATGGGTTATGCAAGAAGGGAAGTATAAAGCAGGCTT 988
|||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 860 TGATAAATTTTACGTCTTTGATTGATGGGTTATGCAAGAAGGGTAGTATCAAGCAGGCTT 919
Query 989 TTGAGATGTTAGAAGAAATGGTTAGGAACGGTTGGAAACCAAATGTGTATACACACACGG 1048
|||| |||||||| ||||||||||| || || ||||| ||||||||||||||||||||||
Sbjct 920 TTGAAATGTTAGAGGAAATGGTTAGAAATGGGTGGAAGCCAAATGTGTATACACACACGG 979
Query 1049 CTTTGATTGATGGGCTATGTAAAAGAGGATGGACTGAGAAAGCGTTTAGGTTGTTCCTGA 1108
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 980 CTTTAATTGATGGGCTATGTAAAAGAGGATGGACTGAGAAAGCGTTTAGGCTGTTCCTGA 1039
Query 1109 AACTCGTTCGTAGTGATATTTACAAACCCAATGTGCATACCTATACTTCGATGATTGGTG 1168
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1040 AACTCGTTCGTAGTGATACTTACAAACCCAATGTGCATACTTATACTTCGATGATTGGTG 1099
Query 1169 GGTATTGCAAAGAGGATAAGCTGAACCGTGCAGAGATGTTGTTTAGTAGAATGAAAGAGC 1228
|||||||||| || |||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1100 GGTATTGCAAGGAAGATAAGTTGAACCGTGCAGAGATGTTGTTTAGTAGAATGAAAGAAC 1159
Query 1229 AGGGTTTGTTTCCTAACGTGAACACGTATACAACACTCATTGATGGTCACTGTAAAGCAG 1288
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1160 AGGGTTTGTTTCCGAACGTGAACACGTATACAACACTCATCAATGGTCACTGTAAAGCAG 1219
Query 1289 GAAACTTTGATAGAGCGTACGAGTTGATGAATTTGATGGGTGATGAAGGTTTTAGGCCGA 1348
||| ||| | |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1220 GAAGCTTCGGTAGAGCGTACGAGTTGATGAATTTGATGGGTGATGAAGGTTTTATGCCGA 1279
Query 1349 ATATTTATACGTATAATGCGGTTATAGACAGTCTCTGTAAGAAATCAAGGGCACCTGAGG 1408
||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||
Sbjct 1280 ATATTTATACGTATAATGCAGCTATTGACAGTCTCTGTAAGAAATCAAGGGCACCTGAGG 1339
Query 1409 CATATGAGTTGCTGAATAAAGCATTTTCTTGTGGATTAGAAGCAGATGGAGTTACTTACA 1468
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1340 CATATGAGTTGCTGAATAAAGCATTTTCTTGTGGATTAGAAGCTGATGGAGTTACTTACA 1399
Query 1469 CTATTCTTATCCAAGAACAGTGTAAGCAAAGTGACATTAAGCAAGCTCTTGCTTTTTTCT 1528
|||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1400 CTATTCTTATTCAAGAACAGTGTAAGCAAAATGACATTAACCAAGCTCTTGCTTTTTTCT 1459
Query 1529 GTCGGATGAATAAGAGTGGTTTTGAAGCCGATATGCGCCTGAACAACATACTGATAGCTG 1588
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1460 GTCGGATGAATAAGACTGGTTTTGAAGCCGATATGCGCCTGAACAACATACTGATAGCTG 1519
Query 1589 CATTTTGTAGGCAAAAGAAAATGAAGGAAAGTGAGAGGCTTTTTCAGTTAGTAGTGAGTC 1648
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1520 CATTTTGTAGGCAAAAGAAAATGAAGGAAAGTGAGAGGCTTTTTCAGTTGGTGGTGAGTC 1579
Query 1649 TTGGATTGGTTCCAACGAAGGAGACTTATACGTCTATGATAAGCGGGTATTGTAAAGAAG 1708
|||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1580 TTGGATTGATTCCAACGAAGGAGACTTATACGTCTATGATAAGCTGTTATTGTAAAGAAG 1639
Query 1709 GCGACATTGATCTGGCTTTGAAATATTTTCACAACATGAAGAGGCATGGTTGTGTTCCTG 1768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1640 GCGACATTGATCTGGCTTTGAAATATTTTCACAACATGAAGAGGCATGGTTGTGTTCCTG 1699
Query 1769 ATAGCTTCACTTATGGTTCACTAATAAGTGGTCTCTGCAAGAAGTCCATGGTAGATGAAG 1828
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1700 ATAGCTTCACTTATGGTTCACTAATAAGCGGTCTCTGCAAGAAGTCCATGGTAGATGAAG 1759
Query 1829 CTTGTAAGCTTTACGAAACGATGATTGACAGAGGTTTATCTCCTCCTGAGGTAACTCGAG 1888
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1760 CTTGTAAGCTTTACGAAGCGATGATTGACAGAGGTTTATCTCCTCCTGAGGTAACTCGAG 1819
Query 1889 TCACATTAGCATATGAGTATTGTAAGAGGAATGATTCAGCCAGCGCAATGATTGTGCTTG 1948
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1820 TCACATTAGCATATGAGTATTGTAAGAGGAATGATTCAGCCAATGCAATGATTCTGCTTG 1879
Query 1949 AACCTCTAGATAAGAAACTATGGATTAGAACTGTTAGGACACTTGTGAGAAAGTTGTGTA 2008
||||| |||||||||| || ||||||||||| |||||||||||||| |||||||| ||||
Sbjct 1880 AACCTTTAGATAAGAAGCTGTGGATTAGAACGGTTAGGACACTTGTTAGAAAGTTATGTA 1939
Query 2009 GTGAGAAGAAAGTCGGAGTGGCAGCTCTGTTCTTTCAGAAATTGTTGGAGAAGGACAGTA 2068
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1940 GCGAGAAGAAAGTTGGAGTGGCAGCTCTGTTCTTTCAGAAATTGTTGGAGAAGGACAGTA 1999
Query 2069 GTGCTGATCGGGTTACCTTAGCTGCTTTCACTACAGCTTGTTCTGAGTCTGGCAAAAACA 2128
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2000 GTGCTGATCGTGTTACCTTAGCTGCTTTCACTACAGCTTGTTCTGAGTCTGGCAAAAACA 2059
Query 2129 ATCTTGTTGCTGATTTGACCGAGAGAATCTCCAGAGGAGTAGGCTAG 2175
| |||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 2060 ACCTTGTTACTGATTTGACTGAGAGAATCTCCAGAGGAGTAGGCTAG 2106
> AT4G19900.1 | Symbols: | alpha 1,4-glycosyltransferase family
protein | chr4:10789096-10791433 REVERSE LENGTH=1983
Length=1983
Score = 226 bits (122), Expect = 8e-58
Identities = 136/143 (95%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 12 CTATTATGCATACCCTGCAATAGAAGATGAGAAATCACAGCAAGACGAATCGTTCAAGAA 71
||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1749 CTATTTTGCATACCCTGCAATAGAAGATGAGAGATCGCAGCAAGACGAATCGTTCAAGAA 1808
Query 72 GATCCTCAACGAGTCCTTAACGTTCCATTTCTGGAACAGCATAACTTCCTCACTGATCCC 131
||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1809 GATACTCAATGAGTCCTTAACGTTCCATTTCTGGAACAGCGTAACTTCCTCACTGATCCC 1868
Query 132 TGAATCTGAGAGCCTTGTGGCTA 154
|||| ||||||||||||||||||
Sbjct 1869 TGAACCTGAGAGCCTTGTGGCTA 1891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107880971205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5