BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890214
Length=2367
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid bindi... 3675 0.0
AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1594 0.0
AT5G05720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 119 1e-25
> AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid binding;RNA
binding | chr4:10677229-10681771 FORWARD LENGTH=2852
Length=2852
Score = 3675 bits (1990), Expect = 0.0
Identities = 2249/2372 (95%), Gaps = 25/2372 (1%)
Strand=Plus/Plus
Query 1 ATGCGTTCCAATGATGGTAAGAGTAGACAATTTGCTTTTATTGGATTTCGTAGTGCTCAA 60
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 353 ATGCGTTCCAATGATGGTAAGAGTAGACAATTTGGTTTTATTGGATTCCGTAGTGCTCAA 412
Query 61 GAAGCTCAAGAAGCTATTAAGTACTTCAACAAGT-CTTATCTTGATACTTCTCGTAT-AT 118
||||||||| |||||||||||||||||||||| | ||||||||| |||||||| ||| |
Sbjct 413 GAAGCTCAACAAGCTATTAAGTACTTCAACAA-TACTTATCTTGGTACTTCTCTTATCA- 470
Query 119 TTGTTGAGATTGCTCATAAAGTCGGAGATGAGAATGCTCCTCGTCCCTGGAGTCGTCTTT 178
|||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 471 TTGTTGAGATTGCTCACAAAGTTGGAGATGAGAATGCTCCTCGTCCGTGGAGTCGTCTTT 530
Query 179 CACACAAGAAAGAAGAGGAAGCTAATGAAAACAGTAAAAAATCTTCTACTGAAGTCTTAA 238
|||| ||||||||||| | | || | | |||||||||||||| ||||| |||||
Sbjct 531 CACATAAGAAAGAAGA-G--G--AA-G----C--TAAAAAATCTTCTAGTGAAGGCTTAA 578
Query 239 ACA-ATGGTAATGCTAAAGGAGGTAAAAAGAAGAAAGCAGAGGTTGACGATCCTGAGTTC 297
| | ||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||
Sbjct 579 A-AGATGGTAATGCTAAAGGAGGTAAAAAGAGGAAAGCAGAGGTTGATGATCCTGAATTT 637
Query 298 CAAGAATTTCTTGAGGTTCATGAGAGGAGTAAGTCGAAAATCTGGTCCAATGACATGTCC 357
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 638 CAAGAATTTCTTGAGGTTCATCAGAGGAGTAAGTCGAAAATCTGGTCTAATGACATGTCG 697
Query 358 ATTCCTCCTGCTCCTGAAGAAACCGGTAAAGAGAAGGTCTTGGTGAAGAAAGCGGATGAG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 698 ATTCCTCCTGCTCCTGAAGAAACCGGTAAAGAGAAGGTCTTGGTGAAGAAAGCAGATGAG 757
Query 418 CCAATGA-TTTTCAATGGTGCTGAGCCTAAGAAAGCTAAAAAGTCATCTGATACCGAAAA 476
| ||| | ||| |||||||| ||||||||||||||||||||| ||||||||||| |||||
Sbjct 758 CAAAT-AGTTTCCAATGGTGTTGAGCCTAAGAAAGCTAAAAAATCATCTGATACTGAAAA 816
Query 477 GACTAAAAAGAGCAAAGTTGTTGCTGCCAGCGATGATGTTTCTGATATGGAATACTTCAA 536
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 817 GACTAAAAAGAGCAAAGTTGTTGCTGCCAGTGATGATGTTTCTGATATGGAATACTTCAA 876
Query 537 GAGTAGGGTTAAGAAAAATCTGTCGGATTCGGACAGTGATAATGAATCTGAGGATAGTAG 596
||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 877 GAGTAGGATTAAGAAAAATCTGTCTGATTCGGAGAGTGATAATGAATCTGAGGATAGTAG 936
Query 597 TGAAGATGAAGCTAGTGATGATGATGGTAAAGCTGAGGCAGATGGTCATGATGCTGATAT 656
||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 937 TGAAGATGAAGCTGGTGATGATGATGGTAAAGCTGAGACAGATGGTCAGGATGCTGATAT 996
Query 657 TCGTAATTTTCCTATTGATGGCAATGTTGAAGCTGGCGGAGTTGATAAAGATGATGATGG 716
|||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 997 TCGTTATTTTCCTATTGATGGCGATGTTGAAGCTGGCGGAGTTGGTAAAGATGATGATGG 1056
Query 717 CGATACCATGGAAGTAGAAGCCGATGGCAAGGTGGCTCAAGAATTGAAAGCTGACAGTGA 776
|||| ||||||||||||||| |||||||||||||||||||||| |||||||| ||||||
Sbjct 1057 CGATGCCATGGAAGTAGAAGGTGATGGCAAGGTGGCTCAAGAATCGAAAGCTGTCAGTGA 1116
Query 777 TGATGTTCTGGACACTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAACAGAAGA 836
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 TGATGTTCTTGACACTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAACAGAAGA 1176
Query 837 AGAGCTTATGGAACATTTTAGCAAATTTGGTGAGATATCAGAAGTCCATCTTGTTCTTGA 896
||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||
Sbjct 1177 AGAGCTTATGGAACATTTTAGCACATTCGGTAAGATATCAGAAGTCCATCTTGTTCTTGA 1236
Query 897 CAAGGAGACAAAAAGGTCCAGGGGAATTGCCTACATCCTTTACCCGATTCCGGAATGTGC 956
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1237 CAAGGAGACAAAAAGGTCCAGGGGAATTGCCTACATCCTTTACCTGATTCCGGAATGTGC 1296
Query 957 GGCAAGGGCAATGGAGGAATTAGATAACTCAAGTTTTCAGGGCCGGTTGTTGCATGTTTT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1297 GGCAAGGGCAATGGAGGAATTAGATAACTCAAGTTTTCAGGGCCGGTTGTTGCATATTTT 1356
Query 1017 GCCAGCCAAGCACCGTGAAACATCTGATAAACAAGTGAATGACACTTCTAACCTGCCAAA 1076
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1357 GCCAGCTAAGCACCGTGAAACATCTGATAAACAAGTGAATGACACTTCTAACCTGCCAAA 1416
Query 1077 AACTTTCAAGCAAAAGAGAGAGGAACAAAGAAAGGCATCTGAAGCTGGTGGAAATACAAA 1136
||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1417 AACATTCAAGCAGAAGAGAGAGGAACAAAGAAAGGCATCTGAAGCTGGTGGAGATACAAA 1476
Query 1137 GGCTTGGAATAGTTTATTCATGCGACCCGATACTATTCTAGAAAACATAGTCAGGGTGTA 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 GGCTTGGAATAGTTTATTCATGCGACCCGATACTATTCTAGAAAACATAGTCAGGGTGTA 1536
Query 1197 TGGTGTAAGCAAGAGTGAGCTACTTGACCGTGAAGCTGAAGATCCTGCTGTACGCCTTGC 1256
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1537 TGGTGTAAGCAAGAGTGAGTTACTTGACCGTGAAGCTGAAGATCCTGCTGTACGCCTTGC 1596
Query 1257 TTTGGGAGAAACAAAAGTGATTGCGGAGACCAAAGAAGCCCTTGCTAAAGCTGGAGTAAA 1316
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1597 TTTGGGAGAAACAAAAGTGATTGCGGAGACCAAAGAAGCCCTTGCGAAAGCTGGAGTAAA 1656
Query 1317 TGTTACTTCTTTGGAAGAATTTGCTACAAGGAATGGTGATGAGAATAACCGAAGCAAACA 1376
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1657 TGTTACTTCTTTGGAAAAATTTGCTACAAGGAATGGTGATGAGAAAAACCGAAGCAAACA 1716
Query 1377 TATCCTCTTAGTAAAGAATTTGCCATTTGCTTCCACTGAAAAGGAACTGGCTCAAATGTT 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1717 TATCCTCTTAGTAAAGAATTTGCCATTTGCTTCCACTGAAAAGGAACTGGCTCAAATGTT 1776
Query 1437 TGGAAGATTTGGAAGTCTAGACAAAATTATCCTCCCTCCGACGAAGACGATGGCCTTGGT 1496
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 TGGAAAATTTGGAAGTCTAGACAAAATTATCCTCCCTCCGACGAAGACGATGGCCTTGGC 1836
Query 1497 TGTGTTTCTTGAGCCGGCTGAGGCACGCGCAGCTCTTAAGGGAATGTCATACAAGCGTTA 1556
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1837 TGTGTTTCTGGAGCCGGCTGAGGCACGCGCAGCTCTTAAGGGAATGGCATACAAGCGTTA 1896
Query 1557 CAAAGATGCTCCCTTGTATCTGGAGTGGGCTCCTGGAAATATTCTTGAGCCAAAAACTCT 1616
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1897 CAAAGATGCTCCCTTGTATCTGGAGTGGGCTCCTGGAAATATTCTTGAGCCAAAAAATCT 1956
Query 1617 TCCTGACAACAATGAAGAGAAGA-GTGATGTTGCAGAAATTGGCGTGAGAAGAGTCAACT 1675
|||||||| ||||||||||| || |||| ||| ||||| ||||||||||||||||||||
Sbjct 1957 TCCTGACACCAATGAAGAGA-GAAGTGACATTGAAGAAAATGGCGTGAGAAGAGTCAACT 2015
Query 1676 TGGAGCAGCAGGTTGAAATCGATCCAGATGTAACTGAGTCAAATGTTCTTCATGTTAAGA 1735
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 2016 TGGAGCAGCAGGTTGAAATCGATCCAGATGTAACTGAGTCAAATGTCCTTAATGTTAAGA 2075
Query 1736 ATCTGAGCTTCAAGACAACTGATGAGGGTTTGAAGAAGCATTTGACTAAACTGGTGAAGC 1795
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2076 ATCTGAGCTTCAAGACAACTGATGAGGGTTTGAAGAAGCATTTCACTAAACTGGTGAAGC 2135
Query 1796 AGGGAAAGATTCTCAGTGTCAAGATAATAAAGCATGTAAAGAATGGGAAAAATCTTTCGA 1855
||||||||||||||||||||| ||||||||||||| |||||||| ||| ||||||| |
Sbjct 2136 AGGGAAAGATTCTCAGTGTCACGATAATAAAGCATAAAAAGAATGAGAAGTATCTTTCAA 2195
Query 1856 GAGGTTATGGTTTTGTAGAATTCGACTCTGTAGAGACAGCCACCAATGTCTACAGAGATT 1915
| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2196 GCGGTTATGGTTTTGTAGAATTCGACTCTGTAGAGACAGCCACCAGTGTCTACAGAGATC 2255
Query 1916 TACAGGGAACTGTTCTGGATGGGCATGCTTTGATCTTGAGATTCTGTGAAAACAAGCGGA 1975
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2256 TACAGGGGACTGTTCTGGATGGGCATGCTTTGATCTTGAGATTCTGTGAAAACAAGCGGA 2315
Query 1976 GTGACAAGGCTGGGAAAGATTCAGGCAAGGACAAACCTTCTACAAAGTTACATGTGAAAA 2035
||||||||| ||| ||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 2316 GTGACAAGGTTGGAAAAGATTCAAACAAGGACAAACCTTGTACAAAGTTACATGTGAAAA 2375
Query 2036 ATGTAGCTTTTGAGGCAACCAAGAAAGAACTAAAACAGCTATTCAGTCCATTTGGACAGA 2095
|| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 2376 ATATAGCTTTTGAGGCAACCAAGAGAGAACTAAGACAGCTATTCAGTCCATTTGGACAGA 2435
Query 2096 TCAAGAGTATGAGGCTTCCAAAGAGGAATATCGAGCAATATGCTGGTTTTGCGTTTGTTG 2155
|||||||||||||||||||||||| |||||||| |||||||||||||| ||| |||||||
Sbjct 2436 TCAAGAGTATGAGGCTTCCAAAGAAGAATATCGGGCAATATGCTGGTTATGCTTTTGTTG 2495
Query 2156 AATTCGTGACAAAGCAAGAAGCCTTAAACGCTAAAAAAGCATTAGCCAGCACCCATTTCT 2215
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2496 AATTTGTGACAAAGCAAGAAGCCTTAAACGCTAAAAAAGCATTAGCCAGCACCCATTTCT 2555
Query 2216 ACGGACGCCATTTGGTGCTCGAGTGGGCCAACGATGACAATAGCATGGAAGCGATCAGGA 2275
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2556 ACGGACGCCATTTGGTGCTCGAGTGGGCTAACGATGACAATAGCATGGAAGCGATCAGGA 2615
Query 2276 AGCGTTCCGCTGCTAAGTTGGACGAAGAAAATGATAATGCAAAGAAAAGGAAAAGCTCGA 2335
||||||| ||||||||||| ||||||||||| |||||||||| |||||||||||||||||
Sbjct 2616 AGCGTTCTGCTGCTAAGTTTGACGAAGAAAACGATAATGCAAGGAAAAGGAAAAGCTCGA 2675
Query 2336 AAGTTGTTGATGAAGACAAAAACGAAGTTTGA 2367
||| |||||| | | |||||| |||||||||
Sbjct 2676 AAGCTGTTGAAG--G-CAAAAATGAAGTTTGA 2704
> AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:2829193-2834695 FORWARD LENGTH=2643
Length=2643
Score = 1594 bits (863), Expect = 0.0
Identities = 1363/1600 (85%), Gaps = 51/1600 (3%)
Strand=Plus/Plus
Query 771 CAGTGATGATGTTCTGGACACTGGTCGCCTTTTCGTCCGTAACCTGCCTTACACTGCAAC 830
||||||||||||||| ||| |||||||||||||||||| | |||||||||| || | ||
Sbjct 805 CAGTGATGATGTTCTTGACGCTGGTCGCCTTTTCGTCCATGGCCTGCCTTACTCTACCAC 864
Query 831 AGAAGAAGAGCTTATGGAACATTTTAGCAAATTTGGTGAGATATCAGAAGTCCATCTTGT 890
|||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||||
Sbjct 865 AGAAGAAGAGCTTATGGAACATTTCAGCAAATTCGGTGATATATCAGAGGTCCATCTTGT 924
Query 891 TCTTGACAAGGAGACAAAAAGGTCCAGGGGAATTGCCTACATCCTTTACCCGATTCCGGA 950
|||||||||||| || | ||| | ||||||||| |||| | ||||||||| ||| |||||
Sbjct 925 TCTTGACAAGGATACCAGAAGTTGCAGGGGAATGGCCTTCGTCCTTTACCTGATACCGGA 984
Query 951 ATGTGCGGCAAGGGCAATGGAGGAATTAGATAACTCAAGTTTTCAGGGCCGGTTGTTGCA 1010
|| ||| || ||||||||| |||||||||| | | ||| ||||||||| ||||||
Sbjct 985 ATCTGCAAAAATGGCAATGGATAAATTAGATAAGTTACCTTTCCAGGGCCGGACGTTGCA 1044
Query 1011 TGTTTTGCCAGCCAAGCACCGTGAAACATCTGATAAACAAGTGA-ATGACACTTCTAACC 1069
| |||| ||||| |||| ||||| || |||| ||||||||| | || || | ||||| |
Sbjct 1045 TATTTTACCAGCTAAGCCCCGTGCAATGTCTGCTAAACAAGT-AGATAACTCCTCTAATC 1103
Query 1070 TGCCAAAAACTTTCAAGCAAA-AGAGAGAGGAACAAAGAAAGGCATCTGAAGCTGGTGGA 1128
|||||||| | |||||| ||| |||| ||||||||||| ||||| ||||||||| |||||
Sbjct 1104 TGCCAAAATCATTCAAG-AAAGAGAGGGAGGAACAAAGGAAGGCGTCTGAAGCTTGTGGA 1162
Query 1129 AATACAAAGGCTTGGAATAGTTTATTCATGCGACCCGATACTATTCTAGAAAACATAGTC 1188
|| ||||| |||||||| ||||| |||||||||||||||||||| || |||||| |||||
Sbjct 1163 AACACAAATGCTTGGAACAGTTTCTTCATGCGACCCGATACTATCCTGGAAAACTTAGTC 1222
Query 1189 AGGGT-GTATGGTGTAAGC-AAGAGTGAGCTACTTGACCGTGAA-GCTGAAGATCCTGCT 1245
| ||| ||||||||||| | ||||||||| |||||||||||||| || |||||||||||
Sbjct 1223 A-GGTCGTATGGTGTAA-CAAAGAGTGAGTTACTTGACCGTGAATGC-GAAGATCCTGCA 1279
Query 1246 GTACGCCTTGCTTTGGGAGAAACAAAAGTGATTGCGGAGACCAAAGAAGCCCTTGCTAAA 1305
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1280 GTACGCCTTGCTTTGGGAGAAACAAGAGTGATTATGGAGACCAAAGAAGCCCTTGCTAAA 1339
Query 1306 GCTGGAGTAAATGTTACTTCTTTGGAAGAATTTGCTACAAGGAATGGTGATGAGAATAAC 1365
||||||||| ||| || |||||||||||||||||| || |||| ||||| | ||| |||
Sbjct 1340 GCTGGAGTACGTGTCACCTCTTTGGAAGAATTTGCTGCACGGAAAGGTGACGTGAAGAAC 1399
Query 1366 CGAAGCAAACATATCCTCTTAGTAAAGAATTTGCCATTTGCTTCCACTGAAAAGGAACTG 1425
||||||||||||| |||||||| ||| ||||||| ||||||||||||||||||||||||
Sbjct 1400 AGAAGCAAACATATTCTCTTAGTCAAGCATTTGCCCTTTGCTTCCACTGAAAAGGAACTG 1459
Query 1426 GCTCAAATGTTT-GGAAGATTTGGAAGTCTAGACAAAATTATCCTCCCTCCGACGAAGAC 1484
|||||||||||| |||| |||||||||||||||||||||| | ||||||||||| |||||
Sbjct 1460 GCTCAAATGTTTCGGAA-ATTTGGAAGTCTAGACAAAATTGTTCTCCCTCCGACTAAGAC 1518
Query 1485 GATGGCCTTGGTTGTGTTTC-TTGA-GCCGGCTGAGGCACGCGCAGCTCTTAAGGGAATG 1542
|||||| |||||||| |||| |||| || |||||||||||| |||||| | || ||| ||
Sbjct 1519 GATGGCTTTGGTTGT-TTTCCTTGAAGC-GGCTGAGGCACGTGCAGCTATGAACGGATTG 1576
Query 1543 TCATACAAGCGTTACAAAGATGCTCCCTTGTATCTGGAGTGGGCTCCTGGAAATATTCTT 1602
|||||| ||||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 1577 GCATACACGCGTTACAAAGATGCTCCCCTGTATCTGGAGTGGGCTCCTCGAGATATTCTT 1636
Query 1603 GAGCCAAAAACTCTT-CCTGACAACAATGAAGAGAAGAGTGATGTTGCAGAAATTGGCGT 1661
||||||||| | ||| || || ||||| ||| ||||||||| ||| | ||||| || |
Sbjct 1637 GAGCCAAAAGCACTTGCC-GATAACAAAGAAAAGAAGAGTGCTGTCGAAGAAAATGATGC 1695
Query 1662 GAGAAGAGTCAACTTGGAGCAGCAGGTTGAAATCGATCCAGATGTAACTGAGTCAAATGT 1721
||||||||||||||| || |||||||||| |||| || | ||| |||| |||||||||||
Sbjct 1696 GAGAAGAGTCAACTTAGATCAGCAGGTTGGAATCTATTCGGATATAACCGAGTCAAATGT 1755
Query 1722 TCTTCATGTTAAGAATCTGAGCTTCAAGACAACTGATGAGGGTTTGAAGAAGCATTTGAC 1781
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1756 CCTTCATGTAAAGAATCTGAGCTTCAAGACAACTGATGAGGGGTTGAAGAAGCATTTGAC 1815
Query 1782 TAAACTGGTGAAGCAGGGAAAGATTCTCAGTGTCAAG-A--TAATAAAGCATGTAAAGAA 1838
| | |||||||||||||||||||||| ||||| ||| | |||||| | | | | | |
Sbjct 1816 TGGAGTGGTGAAGCAGGGAAAGATTCTGAGTGTTAAGCAGATAATAA-G-A-G-ACTGGA 1871
Query 1839 TGGGAAAAATCTTTCGAGAGGTTATGGTTTTGTAGAATTCGACTCTGTAGAGACAGCCAC 1898
| || || ||| || |||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 1872 CGAGACG--TCGTTCAAGCGGTTATGGTTTTGTAGAATTTGACTCCGTAGAGACAGCGAC 1929
Query 1899 CAATGTCTACAGAGATTTAC-AGGGAACTGTTCTGGATGGGCATGCTTTGATCTTGAGAT 1957
|| ||||||||||||| ||| ||| || |||||||||||||||| |||||||||||| ||
Sbjct 1930 CAGTGTCTACAGAGATCTACCAGGAAA-TGTTCTGGATGGGCATTCTTTGATCTTGA-AT 1987
Query 1958 TCTG-TGAAAACAAGCGGAGTGACAA-GGCTGGGAAAGATTCAGGCAAGG--ACAAACCT 2013
| | |||||||||||||||||| || || |||| ||| ||||| ||||| ||||| |
Sbjct 1988 TTTTCTGAAAACAAGCGGAGTGA-AACGGTTGGGGAAGGTTCAGACAAGGTCACAAAG-T 2045
Query 2014 TCTACAAAGTTACATGTGAAAAATGTAGCTTTTGAGGCAACCAAGAAAGAACTAAAACAG 2073
| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 2046 TGG-CAAAGTTACATGTGAAAAATGTAGCTTTTGAAGCAACCAAGAAAGAACTAAGACAG 2104
Query 2074 CTATTCAGTCCATTTGGACAGAT-CAAGAGTA-T-GAGGCTTCCAAAGAGGAATATCGAG 2130
|| |||||||||||||||||||| |||||| | | | |||||||| || |||| | |||
Sbjct 2105 CTTTTCAGTCCATTTGGACAGATTCAAGAG-AGTTG-GGCTTCCATTGAAGAATGT-GAG 2161
Query 2131 CAA-TATGCTGGTTTTGCGTTTGTTGAATTCGTGACAAAGCAAGAAGCCTTAAACGCTAA 2189
|| || ||||||| ||| ||||| ||||| | ||||| ||||||||| |||||||||||
Sbjct 2162 AAAATACGCTGGTTATGCTTTTGTAGAATTTGGGACAATGCAAGAAGCTTTAAACGCTAA 2221
Query 2190 AAAAGCATTAGCCAGCACCCATTTCTACGGACGCCATTTGGTGCTCGAGTGGGC-CAACG 2248
||| ||| | ||| |||||||||||| |||||||||||||||||||||||||| | |
Sbjct 2222 AAAGGCACTCTCCAACACCCATTTCTATGGACGCCATTTGGTGCTCGAGTGGGCTCGT-G 2280
Query 2249 ATGACAATAGCATGGAAGCGAT-CAGGAAGCGTTCCGCTGCTAAGT-T--GGACGAAGAA 2304
||||| | |||||||||||||| || || | || ||||| |||| | || | |||||
Sbjct 2281 ATGACGAGAGCATGGAAGCGATTCAAAAATC-TTGTGCTGCCAAGTATATGGGCCAAGAA 2339
Query 2305 AATGATAATGCAAAGAAAAGGAAAAGCTCGAAAGTTGTTG 2344
|| |||||| ||||||||||||||||||||| ||||||||
Sbjct 2340 AACGATAATCCAAAGAAAAGGAAAAGCTCGACAGTTGTTG 2379
Score = 87.9 bits (47), Expect = 4e-16
Identities = 110/137 (80%), Gaps = 17/137 (12%)
Strand=Plus/Plus
Query 429 CAATGGTGCTGA-G--CCTAAGAAAGCTAAAAAG-TCA-TC-T-GATACCGAAAAGACTA 481
|||||||||||| | ||||| ||||| ||||| ||| || | ||| | |||||||||
Sbjct 553 CAATGGTGCTGATGACCCTAACAAAGC-CAAAAGATCATTCTTAGATTCTAAAAAGACTA 611
Query 482 AAAAGAGCAAAGTTGTTGCTGCCAGCGATGATGTTTCTGATATGGAATACTTCAAGAGTA 541
|||||| ||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 612 GAAAGAGTAAAGTTG--G-T------GATGATGTTTCTGATATGGAATACTTCAAGAGTC 662
Query 542 GGGTTAAGAAAAATCTG 558
|| | ||||||||||||
Sbjct 663 GGATAAAGAAAAATCTG 679
> AT5G05720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:1716871-1719541 FORWARD LENGTH=1356
Length=1356
Score = 119 bits (64), Expect = 1e-25
Identities = 120/146 (82%), Gaps = 8/146 (5%)
Strand=Plus/Plus
Query 438 TGAGCCTAAGAAAGCTAAAA-AGTCA-T-CT-GATACCGAAAAGACTAAAAAGAGCAAAG 493
||||||||| ||||| |||| | ||| | | ||| | ||||||||| ||||| ||||
Sbjct 348 TGAGCCTAACAAAGCGAAAATA-TCATTATTAGATTCTAAAAAGACTAGAAAGATTAAAG 406
Query 494 TTGTTG--CT-GCCAGCGATGATGTTTCTGATATGGAATACTTCAAGAGTAGGGTTAAGA 550
|||||| || | | ||||||||||||||||||||||||| ||||||| || ||||
Sbjct 407 TTGTTGCTCTCGTTGGTGATGATGTTTCTGATATGGAATACTACAAGAGTCGGACAAAGA 466
Query 551 AAAATCTGTCGGATTCGGACAGTGAT 576
||||||||||||||||||||||||||
Sbjct 467 AAAATCTGTCGGATTCGGACAGTGAT 492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117519475845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5