BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg890225 Length=3141 Score E Sequences producing significant alignments: (Bits) Value AT4G19510.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 1179 0.0 > AT4G19510.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR class) | chr4:10633685-10639001 FORWARD LENGTH=4225 Length=4225 Score = 1179 bits (638), Expect = 0.0 Identities = 927/1064 (87%), Gaps = 29/1064 (3%) Strand=Plus/Plus Query 1430 TTGAGATGCATGATCTAATGCATGCAATGGGGAAGGAAATTGGATATGAATCATCCATCA 1489 ||||||||||||||||| |||||||||||||||||||||||||| | ||| |||||||| Sbjct 1454 TTGAGATGCATGATCTATTGCATGCAATGGGGAAGGAAATTGGAAAAGAAAAATCCATCA 1513 Query 1490 -AAAGGGCAGGCAAACGTAGCAGGTTGTGGAACCACAAAGATATTCGCAATGTGCTGGAG 1548 ||| ||||||| ||||| | |||||||||||||||||||||||||| || | |||||| Sbjct 1514 GAAA-GGCAGGCGAACGTCGTAGGTTGTGGAACCACAAAGATATTCGTGATATCCTGGAG 1572 Query 1549 CAGAGA-ACGGGAACTGAATGTGTTAGAGGCATCTTCTTGAACATGTCT-AATGTCGA-A 1605 || | | ||||| |||||||||||||||||||||||||||||||||||| || ||| | | Sbjct 1573 CATA-ACACGGGCACTGAATGTGTTAGAGGCATCTTCTTGAACATGTCTGAA-GTC-AGA 1629 Query 1606 AGGATCAAGCTAAGTCCTGAC-GTTTTCATGAGGATGTCGAATCTCAAATTCCTGAAGTT 1664 || |||||||| ||||| | | ||||| || | |||| || |||||||||||||| || Sbjct 1630 AGAATCAAGCTTTTTCCTG-CTGCTTTCACGATGTTGTCAAAACTCAAATTCCTGAAATT 1688 Query 1665 CCACAATTCTCATTGTTCCCAGTGGTGTGATAACGACCATAAAATTCAATTCTCTAAAGG 1724 ||||| |||||||||||| |||||||||||||| ||||||| | |||| | ||| |||| Sbjct 1689 CCACAGTTCTCATTGTTCTCAGTGGTGTGATAATGACCATATATTTCAGTGCTCCAAAGT 1748 Query 1725 GCTTGATCATTTTCCGGATGAGCTTGTGTACCTTCACTGGCAGGGGTA-CCCTTACGAAT 1783 | |||||| ||||| ||||||||||| |||||||||||||||||||| ||| || || | Sbjct 1749 CCCTGATCACTTTCCAGATGAGCTTGTTTACCTTCACTGGCAGGGGTATCCC-TATGATT 1807 Query 1784 ATTTACCATCAGAATTCAATCCAGAGGAACTTGTTGATCTTAGTCTACGTTATAGCTACA 1843 | |||||||| ||| ||||| |||||||||| ||||||||||| ||||||||| ||| Sbjct 1808 GCCTGCCATCAGATTTCGATCCAAAGGAACTTGTCGATCTTAGTCTGCGTTATAGCCACA 1867 Query 1844 TCAAACAACTGTGGGAAGATGATAAGAAAACGGAAAATTTAAGATGGGTCGACCTCAGTC 1903 |||||||||||||||||||||| ||||| || |||| ||||||||||||||| ||| ||| Sbjct 1868 TCAAACAACTGTGGGAAGATGAGAAGAATACAGAAAGTTTAAGATGGGTCGATCTCGGTC 1927 Query 1904 AGTCAAAAGACTTGCGGAGTTTATCAGGTTTGTCCAAGGCTAAAAATCTTGAAAGATTGG 1963 ||||||||||||||| | |||||||||||| |||| ||| ||||||||||||||||||| Sbjct 1928 AGTCAAAAGACTTGCTAAATTTATCAGGTTTATCCAGGGCCAAAAATCTTGAAAGATTGG 1987 Query 1964 ACCTCGAAGGCTGTACGAGTTTGGTTCTGTTGGGCTCA-TCAATCGAAAAGATGAAAAAA 2022 | || ||||||||||||||||||| ||| ||||||||| | || || ||||||| || Sbjct 1988 ATCTTGAAGGCTGTACGAGTTTGGATCTCTTGGGCTCAGT-AA---AACAGATGAACGAA 2043 Query 2023 CTTATTTACCTGAACCTCAGAGACTGCACAAGCCTTGAGAGTCTTCCAGAGGGAATCAAA 2082 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 2044 CTTATTTACCTGAACCTCAGAGACTGCACAAGCCTTGAGAGTCTTCCAAAGGGATTCAAA 2103 Query 2083 TTAGAATCT-TTGAAGACTCTGATCCTCAGTGGCTGCTCAAACCTTCAAG-AGTTTCAAA 2140 || ||||| || |||||||||||||||||||| |||| ||| ||| ||| | ||||| | Sbjct 2104 ATAAAATCTCTT-AAGACTCTGATCCTCAGTGGTTGCTTAAAACTT-AAGGACTTTCATA 2161 Query 2141 TTATATCAGACAA-TATTGAATCTCTTTATTTGGAAGGCTCAGCAATTGAACAAGTTGTT 2199 |||||||||| || ||||||||| ||| ||||||||||| ||||||| |||| ||||||| Sbjct 2162 TTATATCAGA-AAGTATTGAATCCCTTCATTTGGAAGGCACAGCAATCGAACGAGTTGTT 2220 Query 2200 GAACACATCGAGAGTCTTCGCAACCTTATATTGCTGAATCTCAAGAATTGTC-GCAGGTT 2258 ||||||||||||||||||| || |||||| ||||||||||||||||||||| | | || Sbjct 2221 GAACACATCGAGAGTCTTCACAGCCTTATTTTGCTGAATCTCAAGAATTGTGAGAAA-TT 2279 Query 2259 AAAGTATCTTCCCAACGATCTTTACAAGCTGAAATCTCTTCAAGAACTGATTCTCTCTGG 2318 |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 2280 GAAGTATCTTCCCAACGATCTTTACAAGCTGAAATCTCTCCAAGAACTGGTTCTCTCTGG 2339 Query 2319 CTGTTCAGCGTTGGAGAGTCTTCCACCAATCAAAGAGGAGATGGAATGCTTAGAGATTTT 2378 ||||||||| ||||||||||||| || ||||||||| |||||||||||||||||||||| Sbjct 2340 TTGTTCAGCGCTGGAGAGTCTTCCGCCCATCAAAGAGAAGATGGAATGCTTAGAGATTTT 2399 Query 2379 GCTTATGGATGGAACGTCCATCAAACAGACACCTGAAACGATTTGTTTGAGTAACCTCAA 2438 |||||||||||||||||| |||||||| |||||||||| || |||||||||||||||||| Sbjct 2400 GCTTATGGATGGAACGTCTATCAAACAAACACCTGAAATGAGTTGTTTGAGTAACCTCAA 2459 Query 2439 GATGTT-TTCGTTTTGTGGATCTAGC-ATCGAAGATTCCACAGG 2480 || || |||||| ||| || || | ||||| ||||||||||| Sbjct 2460 AAT-TTGTTCGTTCTGTCGACCT-GTTATCGACGATTCCACAGG 2501 Score = 399 bits (216), Expect = 6e-110 Identities = 294/332 (89%), Gaps = 4/332 (1%) Strand=Plus/Plus Query 2810 TCTTCGAATGGAGGGAAAAGAGTAATGAGGGTAATAGATGTCATCCCACTAGTGCCTCAT 2869 ||||| ||||||| ||| ||| |||||| ||||||||||||||||||||||||||||||| Sbjct 3302 TCTTCAAATGGAGCGAAGAGACTAATGAAGGTAATAGATGTCATCCCACTAGTGCCTCAT 3361 Query 2870 TTGAATTCTACCTTACCGATGAAACTGAAAGGAAACTAGAATGCTGCAAGGTGATAAGGT 2929 | |||||||||||||| |||||||| ||||| ||||||||||||||| || | |||||| Sbjct 3362 TCGAATTCTACCTTACTGATGAAACCGAAAGAAAACTAGAATGCTGCGAGATTTTAAGGT 3421 Query 2930 GTGGTATGAGTTTGTTATATGCTCCAGATGAAAATGACCGTAGTTTCCAGGGAATACGGG 2989 |||| |||| ||| |||||||||| |||||| || ||||||| |||||||||||||||| Sbjct 3422 GTGGGATGAATTTTTTATATGCTCGAGATGAGAACGACCGTAAATTCCAGGGAATACGGG 3481 Query 2990 TTGCAGACAATGTTGAGCGTACATCTAGTGA-GCTTCTTGTGACCATTCGAGGTCAGTCC 3048 || |||||| ||||||||||||||||||||| || |||||| |||||||||||||||||| Sbjct 3482 TTACAGACACTGTTGAGCGTACATCTAGTGAGGC-TCTTGTAACCATTCGAGGTCAGTCC 3540 Query 3049 CACTCACGGATTGAAGAAAGAAGAAATGGCA-AAGTGAGAGATGAAATCCTGGATATGAG 3107 ||||||||||||||||| |||||| |||||| || | |||||||||||| ||||||||| Sbjct 3541 CACTCACGGATTGAAGAGAGAAGATATGGCAGAA-TAAGAGATGAAATCATGGATATGAC 3599 Query 3108 TGTTTCCTACATGATAGGAGGTTCCGGGTCTT 3139 || |||| ||||||||||||| ||| ||||| Sbjct 3600 TGGATCCTCCATGATAGGAGGTCCCGAGTCTT 3631 Score = 374 bits (202), Expect = 4e-102 Identities = 290/332 (87%), Gaps = 8/332 (2%) Strand=Plus/Plus Query 2482 CTACACTA-TGTAGATGCTCATGGGTGTGTTTCTCTGGAAAAAGTCGCAGAATCAGTGAC 2540 ||||| || | |||||||||||||||||| |||||||||||| || || || || | || Sbjct 2737 CTACAGTACT-TAGATGCTCATGGGTGTGGTTCTCTGGAAAATGTTTCAAAACCACTAAC 2795 Query 2541 -ACTTCCCCTAGTAACTGATAGGATGCATACTACATTCATTTTCACGAATTGCTTCAAGC 2599 | |||| || ||||| || |||||||||||||| |||||||| ||| |||||||||||| Sbjct 2796 GA-TTCCTCTCGTAACCGAGAGGATGCATACTACTTTCATTTTTACGGATTGCTTCAAGC 2854 Query 2600 TAAACCGAGCTGAGCAGGAAGATATTGTAGCTCAGGCCCAACTCAAGAGTCAGTTACTGG 2659 | |||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2855 TGAACCAAGCGGAGAAGGAAGATATTGTAGCTCAGGCCCAACTCAAGAGTCAGTTACTGG 2914 Query 2660 CAAGGACATCTCTTCAGCATAA-CAATAAGGGACTAGTTCTAGAACCTCTGGTTGCTGTT 2718 |||||||||||| ||| ||||| | ||||||||||| |||| || ||||||||||| ||| Sbjct 2915 CAAGGACATCTCGTCATCATAATC-ATAAGGGACTACTTCTGGATCCTCTGGTTGCCGTT 2973 Query 2719 TGTTTTCCAGGA-AGTGAGATACCCTCATGGTTCAGCCATCAGAGGATGGGATCTTTGAT 2777 || ||||||||| | ||| ||||||||||||||| |||||| | |||||||||||||| Sbjct 2974 TGCTTTCCAGGACA-TGACATACCCTCATGGTTCTCCCATCAAAAAATGGGATCTTTGAT 3032 Query 2778 AGAAACCGACCTGCTTCCACACTGGTGCAACA 2809 ||||||||||||||||||||||||||| |||| Sbjct 3033 AGAAACCGACCTGCTTCCACACTGGTGTAACA 3064 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 156219860502 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5