BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890225
Length=3141
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19510.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 1179 0.0
> AT4G19510.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) | chr4:10633685-10639001 FORWARD LENGTH=4225
Length=4225
Score = 1179 bits (638), Expect = 0.0
Identities = 927/1064 (87%), Gaps = 29/1064 (3%)
Strand=Plus/Plus
Query 1430 TTGAGATGCATGATCTAATGCATGCAATGGGGAAGGAAATTGGATATGAATCATCCATCA 1489
||||||||||||||||| |||||||||||||||||||||||||| | ||| ||||||||
Sbjct 1454 TTGAGATGCATGATCTATTGCATGCAATGGGGAAGGAAATTGGAAAAGAAAAATCCATCA 1513
Query 1490 -AAAGGGCAGGCAAACGTAGCAGGTTGTGGAACCACAAAGATATTCGCAATGTGCTGGAG 1548
||| ||||||| ||||| | |||||||||||||||||||||||||| || | ||||||
Sbjct 1514 GAAA-GGCAGGCGAACGTCGTAGGTTGTGGAACCACAAAGATATTCGTGATATCCTGGAG 1572
Query 1549 CAGAGA-ACGGGAACTGAATGTGTTAGAGGCATCTTCTTGAACATGTCT-AATGTCGA-A 1605
|| | | ||||| |||||||||||||||||||||||||||||||||||| || ||| | |
Sbjct 1573 CATA-ACACGGGCACTGAATGTGTTAGAGGCATCTTCTTGAACATGTCTGAA-GTC-AGA 1629
Query 1606 AGGATCAAGCTAAGTCCTGAC-GTTTTCATGAGGATGTCGAATCTCAAATTCCTGAAGTT 1664
|| |||||||| ||||| | | ||||| || | |||| || |||||||||||||| ||
Sbjct 1630 AGAATCAAGCTTTTTCCTG-CTGCTTTCACGATGTTGTCAAAACTCAAATTCCTGAAATT 1688
Query 1665 CCACAATTCTCATTGTTCCCAGTGGTGTGATAACGACCATAAAATTCAATTCTCTAAAGG 1724
||||| |||||||||||| |||||||||||||| ||||||| | |||| | ||| ||||
Sbjct 1689 CCACAGTTCTCATTGTTCTCAGTGGTGTGATAATGACCATATATTTCAGTGCTCCAAAGT 1748
Query 1725 GCTTGATCATTTTCCGGATGAGCTTGTGTACCTTCACTGGCAGGGGTA-CCCTTACGAAT 1783
| |||||| ||||| ||||||||||| |||||||||||||||||||| ||| || || |
Sbjct 1749 CCCTGATCACTTTCCAGATGAGCTTGTTTACCTTCACTGGCAGGGGTATCCC-TATGATT 1807
Query 1784 ATTTACCATCAGAATTCAATCCAGAGGAACTTGTTGATCTTAGTCTACGTTATAGCTACA 1843
| |||||||| ||| ||||| |||||||||| ||||||||||| ||||||||| |||
Sbjct 1808 GCCTGCCATCAGATTTCGATCCAAAGGAACTTGTCGATCTTAGTCTGCGTTATAGCCACA 1867
Query 1844 TCAAACAACTGTGGGAAGATGATAAGAAAACGGAAAATTTAAGATGGGTCGACCTCAGTC 1903
|||||||||||||||||||||| ||||| || |||| ||||||||||||||| ||| |||
Sbjct 1868 TCAAACAACTGTGGGAAGATGAGAAGAATACAGAAAGTTTAAGATGGGTCGATCTCGGTC 1927
Query 1904 AGTCAAAAGACTTGCGGAGTTTATCAGGTTTGTCCAAGGCTAAAAATCTTGAAAGATTGG 1963
||||||||||||||| | |||||||||||| |||| ||| |||||||||||||||||||
Sbjct 1928 AGTCAAAAGACTTGCTAAATTTATCAGGTTTATCCAGGGCCAAAAATCTTGAAAGATTGG 1987
Query 1964 ACCTCGAAGGCTGTACGAGTTTGGTTCTGTTGGGCTCA-TCAATCGAAAAGATGAAAAAA 2022
| || ||||||||||||||||||| ||| ||||||||| | || || ||||||| ||
Sbjct 1988 ATCTTGAAGGCTGTACGAGTTTGGATCTCTTGGGCTCAGT-AA---AACAGATGAACGAA 2043
Query 2023 CTTATTTACCTGAACCTCAGAGACTGCACAAGCCTTGAGAGTCTTCCAGAGGGAATCAAA 2082
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 2044 CTTATTTACCTGAACCTCAGAGACTGCACAAGCCTTGAGAGTCTTCCAAAGGGATTCAAA 2103
Query 2083 TTAGAATCT-TTGAAGACTCTGATCCTCAGTGGCTGCTCAAACCTTCAAG-AGTTTCAAA 2140
|| ||||| || |||||||||||||||||||| |||| ||| ||| ||| | ||||| |
Sbjct 2104 ATAAAATCTCTT-AAGACTCTGATCCTCAGTGGTTGCTTAAAACTT-AAGGACTTTCATA 2161
Query 2141 TTATATCAGACAA-TATTGAATCTCTTTATTTGGAAGGCTCAGCAATTGAACAAGTTGTT 2199
|||||||||| || ||||||||| ||| ||||||||||| ||||||| |||| |||||||
Sbjct 2162 TTATATCAGA-AAGTATTGAATCCCTTCATTTGGAAGGCACAGCAATCGAACGAGTTGTT 2220
Query 2200 GAACACATCGAGAGTCTTCGCAACCTTATATTGCTGAATCTCAAGAATTGTC-GCAGGTT 2258
||||||||||||||||||| || |||||| ||||||||||||||||||||| | | ||
Sbjct 2221 GAACACATCGAGAGTCTTCACAGCCTTATTTTGCTGAATCTCAAGAATTGTGAGAAA-TT 2279
Query 2259 AAAGTATCTTCCCAACGATCTTTACAAGCTGAAATCTCTTCAAGAACTGATTCTCTCTGG 2318
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 2280 GAAGTATCTTCCCAACGATCTTTACAAGCTGAAATCTCTCCAAGAACTGGTTCTCTCTGG 2339
Query 2319 CTGTTCAGCGTTGGAGAGTCTTCCACCAATCAAAGAGGAGATGGAATGCTTAGAGATTTT 2378
||||||||| ||||||||||||| || ||||||||| ||||||||||||||||||||||
Sbjct 2340 TTGTTCAGCGCTGGAGAGTCTTCCGCCCATCAAAGAGAAGATGGAATGCTTAGAGATTTT 2399
Query 2379 GCTTATGGATGGAACGTCCATCAAACAGACACCTGAAACGATTTGTTTGAGTAACCTCAA 2438
|||||||||||||||||| |||||||| |||||||||| || ||||||||||||||||||
Sbjct 2400 GCTTATGGATGGAACGTCTATCAAACAAACACCTGAAATGAGTTGTTTGAGTAACCTCAA 2459
Query 2439 GATGTT-TTCGTTTTGTGGATCTAGC-ATCGAAGATTCCACAGG 2480
|| || |||||| ||| || || | ||||| |||||||||||
Sbjct 2460 AAT-TTGTTCGTTCTGTCGACCT-GTTATCGACGATTCCACAGG 2501
Score = 399 bits (216), Expect = 6e-110
Identities = 294/332 (89%), Gaps = 4/332 (1%)
Strand=Plus/Plus
Query 2810 TCTTCGAATGGAGGGAAAAGAGTAATGAGGGTAATAGATGTCATCCCACTAGTGCCTCAT 2869
||||| ||||||| ||| ||| |||||| |||||||||||||||||||||||||||||||
Sbjct 3302 TCTTCAAATGGAGCGAAGAGACTAATGAAGGTAATAGATGTCATCCCACTAGTGCCTCAT 3361
Query 2870 TTGAATTCTACCTTACCGATGAAACTGAAAGGAAACTAGAATGCTGCAAGGTGATAAGGT 2929
| |||||||||||||| |||||||| ||||| ||||||||||||||| || | ||||||
Sbjct 3362 TCGAATTCTACCTTACTGATGAAACCGAAAGAAAACTAGAATGCTGCGAGATTTTAAGGT 3421
Query 2930 GTGGTATGAGTTTGTTATATGCTCCAGATGAAAATGACCGTAGTTTCCAGGGAATACGGG 2989
|||| |||| ||| |||||||||| |||||| || ||||||| ||||||||||||||||
Sbjct 3422 GTGGGATGAATTTTTTATATGCTCGAGATGAGAACGACCGTAAATTCCAGGGAATACGGG 3481
Query 2990 TTGCAGACAATGTTGAGCGTACATCTAGTGA-GCTTCTTGTGACCATTCGAGGTCAGTCC 3048
|| |||||| ||||||||||||||||||||| || |||||| ||||||||||||||||||
Sbjct 3482 TTACAGACACTGTTGAGCGTACATCTAGTGAGGC-TCTTGTAACCATTCGAGGTCAGTCC 3540
Query 3049 CACTCACGGATTGAAGAAAGAAGAAATGGCA-AAGTGAGAGATGAAATCCTGGATATGAG 3107
||||||||||||||||| |||||| |||||| || | |||||||||||| |||||||||
Sbjct 3541 CACTCACGGATTGAAGAGAGAAGATATGGCAGAA-TAAGAGATGAAATCATGGATATGAC 3599
Query 3108 TGTTTCCTACATGATAGGAGGTTCCGGGTCTT 3139
|| |||| ||||||||||||| ||| |||||
Sbjct 3600 TGGATCCTCCATGATAGGAGGTCCCGAGTCTT 3631
Score = 374 bits (202), Expect = 4e-102
Identities = 290/332 (87%), Gaps = 8/332 (2%)
Strand=Plus/Plus
Query 2482 CTACACTA-TGTAGATGCTCATGGGTGTGTTTCTCTGGAAAAAGTCGCAGAATCAGTGAC 2540
||||| || | |||||||||||||||||| |||||||||||| || || || || | ||
Sbjct 2737 CTACAGTACT-TAGATGCTCATGGGTGTGGTTCTCTGGAAAATGTTTCAAAACCACTAAC 2795
Query 2541 -ACTTCCCCTAGTAACTGATAGGATGCATACTACATTCATTTTCACGAATTGCTTCAAGC 2599
| |||| || ||||| || |||||||||||||| |||||||| ||| ||||||||||||
Sbjct 2796 GA-TTCCTCTCGTAACCGAGAGGATGCATACTACTTTCATTTTTACGGATTGCTTCAAGC 2854
Query 2600 TAAACCGAGCTGAGCAGGAAGATATTGTAGCTCAGGCCCAACTCAAGAGTCAGTTACTGG 2659
| |||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2855 TGAACCAAGCGGAGAAGGAAGATATTGTAGCTCAGGCCCAACTCAAGAGTCAGTTACTGG 2914
Query 2660 CAAGGACATCTCTTCAGCATAA-CAATAAGGGACTAGTTCTAGAACCTCTGGTTGCTGTT 2718
|||||||||||| ||| ||||| | ||||||||||| |||| || ||||||||||| |||
Sbjct 2915 CAAGGACATCTCGTCATCATAATC-ATAAGGGACTACTTCTGGATCCTCTGGTTGCCGTT 2973
Query 2719 TGTTTTCCAGGA-AGTGAGATACCCTCATGGTTCAGCCATCAGAGGATGGGATCTTTGAT 2777
|| ||||||||| | ||| ||||||||||||||| |||||| | ||||||||||||||
Sbjct 2974 TGCTTTCCAGGACA-TGACATACCCTCATGGTTCTCCCATCAAAAAATGGGATCTTTGAT 3032
Query 2778 AGAAACCGACCTGCTTCCACACTGGTGCAACA 2809
||||||||||||||||||||||||||| ||||
Sbjct 3033 AGAAACCGACCTGCTTCCACACTGGTGTAACA 3064
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 156219860502
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5