BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890226
Length=3369
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19500.1 | Symbols: | nucleoside-triphosphatases;transmembr... 2433 0.0
> AT4G19500.1 | Symbols: | nucleoside-triphosphatases;transmembrane
receptors;nucleotide binding;ATP binding | chr4:10625659-10630395
FORWARD LENGTH=4313
Length=4313
Score = 2433 bits (1317), Expect = 0.0
Identities = 2042/2386 (86%), Gaps = 73/2386 (3%)
Strand=Plus/Plus
Query 904 GCCAAAGACGTCATTGATTTTCTTCGCATGCGGCAGACTTCT-GGCATGGAGGCTGTCGA 962
||||| || ||||||||||||||||||| |||||| || | |||| | | | | ||
Sbjct 1680 GCCAATGATGTCATTGATTTTCTTCGCACACGGCAG-GTTTTAGGCA-GCA--C--T-GA 1732
Query 963 GGCTCTCGCTGGTTACCTCAAGGCCATGT-GTGAGGCGCATGGCATCAGACC-AATGGAC 1020
|||||||| || ||||| || || ||||||| |||||| | ||| | |||
Sbjct 1733 GGCTCTCGTTGACCGCCTCATTTTCA-GTAGTGAGGCATTTGGCATAAAACCTGA-GGAA 1790
Query 1021 AATCCTTTTCGCAGCCTAGCTGTGACATCATACCTAAAGTCAGCAAGTGAGATGACTA-G 1079
|| ||||||||||||| |||||| ||||| ||| | ||| | || || || ||||| | |
Sbjct 1791 AACCCTTTTCGCAGCCAAGCTGTAACATCGTACTTGAAGGCGGCCAGGGATATGAC-ACG 1849
Query 1080 AGAAAAAGAATGCATA-TTAGTCTTCTCGTGCAATGAAAACCATGATGTAGACGAGACAT 1138
|||||||||||||||| || || || |||||| | || |||| ||||||||| || ||||
Sbjct 1850 AGAAAAAGAATGCATACTT-GTGTTTTCGTGCCACGACAACCTTGATGTAGATGAAACAT 1908
Query 1139 CTTTTATCGAAGCCATTTCAAAAGAGTTACACAAGCGAGAGG-TCACCCCGTTGATGTAT 1197
|||| || |||||||| |||||||| || ||||||| || || ||| ||| |||| |||
Sbjct 1909 CTTTCATTGAAGCCATCTCAAAAGAATTGCACAAGC-AGGGGTTCATCCCTTTGACATAT 1967
Query 1198 AATCTACTGAGCAGAGAGAACCTGGATGAAAAGATGCTATACAGATCTAGTGTTGGTATT 1257
||||| || ||||||||||||| ||||| ||||| ||||| ||||||| || |||||
Sbjct 1968 AATCTTTTGGGCAGAGAGAACCTCGATGAGGAGATGTTATACGGATCTAGAGTCGGTATC 2027
Query 1258 ATGATACTTTCACA-TAGTTATGCTTGTTCTAGACAGGCTCTTGATCATCTGGTGGAAAT 1316
|||||||||||| | |||||||| || |||||||||| | || ||||| ||||| | | |
Sbjct 2028 ATGATACTTTCA-AGTAGTTATGTTTCTTCTAGACAGTCCCTGGATCACCTGGTTGCAGT 2086
Query 1317 CATGGAGCATGGGAAAGCAAGAAACCTTGTAATTATTCCTATATATTTTAAGGTGACACT 1376
||||||||| ||||| ||| | |||||||||||||||||||||||||||| || | |||
Sbjct 2087 TATGGAGCATTGGAAAACAACAGACCTTGTAATTATTCCTATATATTTTAAAGTAAGACT 2146
Query 1377 TTCAGACATTTGTGGGTTGGAAGGCAGGTTTGAACCA-ATTTATCTGCAG--T-ATATGG 1432
||||||||||||||||||| |||||||||||||| || || ||||||| | |||| |
Sbjct 2147 TTCAGACATTTGTGGGTTGAAAGGCAGGTTTGAAGCAGCGTT-TCTGCAGCTTCATAT-G 2204
Query 1433 ATTCTGC-CCAGCTAAG-CAGAGTTCAGAAATGGAAAGCGGCTATGGCTGAAATAGCGTC 1490
||| | |||| ||| |||||||||||||||||| ||||||||| ||||||||| |||
Sbjct 2205 --TCT-CTCCAG-GAAGACAGAGTTCAGAAATGGAAGGCGGCTATGTCTGAAATAGTGTC 2260
Query 1491 CATCGATGGACATGAATGGGAAAAAGAGAAG-CAGGTTT-TGCTTGCCGAGGAAGTTGTA 1548
||||| ||||||||||| ||| ||| |||| || |||| | ||||||||||||||||||
Sbjct 2261 CATCGGTGGACATGAAT-GGACCAAGGGAAGTCA-GTTTATTCTTGCCGAGGAAGTTGTA 2318
Query 1549 AGAGACGCATGCTTAAACCTATATTC-GAAAAACAGCAAGAATCTGATTAGCATCTTAGC 1607
||| | |||| ||||| ||||| || ||||| |||||||||||| || | ||||||||
Sbjct 2319 AGAAATGCATCCTTAAGGCTATA-TCTGAAAAGTAGCAAGAATCTGCTTGGAATCTTAGC 2377
Query 1608 ATTTTTAAATCACTCCCAGCCTTCAGGCGTGGAAATTGTGGGACTCTGGGGTATGGCTGG 1667
|| ||||||||||||||| || ||| |||||||||| ||||| |||||||||| || ||
Sbjct 2378 GTTGTTAAATCACTCCCAGTCTACAGACGTGGAAATTATGGGAATCTGGGGTATAGCAGG 2437
Query 1668 AATAGGTAAGACATCCATTGCAAGAGAAATTTTTGAAATATTA-GCTCCGA-AATATGAT 1725
||||||||||||||| |||||||||||||| |||||| || | ||||| | | ||||||
Sbjct 2438 AATAGGTAAGACATCGATTGCAAGAGAAATATTTGAATTA-CATGCTCC-ACATTATGAT 2495
Query 1726 TTTTGTTACTTTCTGCAAGACTTTTATCTTATGAGTCAAAAGAAAGGGCTGAGACAAATG 1785
|| |||||||| |||||||||||| |||| ||| |||| | |||| ||| ||| ||| ||
Sbjct 2496 TTCTGTTACTTCCTGCAAGACTTTCATCTAATGTGTCAGATGAAAAGGCCGAGGCAATTG 2555
Query 1786 CGTGATGATTTCT-TCTCTAAAGTATTCAGGGAAGAAAAACTAAGTATAAGTGCTTA-TG 1843
||||| ||||| | |||| ||| | || |||||| |||| | || || |||| || ||
Sbjct 2556 CGTGAAGATTT-TATCTCAAAATTGTTTGGGGAAG-AAAA--AGGTCTAGGTGC-TAGTG 2610
Query 1844 ATATAAAACCGAGTTTCATGAGGGATTGGTTCCACAAGAAAACGATTCTTCTTGTTCTCG 1903
|| |||| || |||||||||||||| |||||||| || |||||||||||||| ||||| |
Sbjct 2611 ATGTAAAGCCAAGTTTCATGAGGGACTGGTTCCATAAAAAAACGATTCTTCTCGTTCTTG 2670
Query 1904 ATGACGTGAGCGATGCCAGAGATGCAGAAGCTGTTGTTGGAGGGTTTGGCTGGTTTTCTC 1963
|||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 2671 ATGACGTGAGTAATGCCAGAGATGCAGAAGCTGTAATCGGAGGGTTTGGCTGGTTTTCTC 2730
Query 1964 ATGGACACAGAATCATCTTAACCTCTAGGAGAAAACAAGTTCTTGTACAGTGTAAGGTTA 2023
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2731 ATGGACACAGAATCATCTTAACCTCTAGGAGTAAACAAGTTCTTGTACAGTGTAAGGTTA 2790
Query 2024 AAGAGACATACAAGATCCAAAAGTTATGCGAGTTTGAATCGTTACGTCTCTGCAAACAAT 2083
|| || ||||| |||||||||| ||| |||| ||||||||||| ||||||||||||||||
Sbjct 2791 AAAAGCCATACGAGATCCAAAAATTAAGCGATTTTGAATCGTTTCGTCTCTGCAAACAAT 2850
Query 2084 ATTTAAATGAAGAAAGTGGGGTCATCT-TGGAGCTGATGAGCTGCAGTAGTGGCATTCCA 2142
|||| ||| |||| | |||||||| | ||||| || |||||||||||||| ||||||
Sbjct 2851 ATTTGGATGGCGAAAATCCGGTCATCTCT-GAGCTTATCAGCTGCAGTAGTGGTATTCCA 2909
Query 2143 TTGGCTCTCAAAGTTTTGGGTTT-CTCTTTATCAAAGCAGCACATAAAC-AATTTGAAGG 2200
|||||||||||| |||| |||| |||| ||||||||||| | || ||| ||| |||| |
Sbjct 2910 TTGGCTCTCAAACTTTT-AGTTTCCTCTGTATCAAAGCAGTATAT-AACGAATATGAAAG 2967
Query 2201 AACATCTCCATAGCTTGCGGAAAAATCCTCCAACTCAGATTCAGGAAGCATTTCGGAGAT 2260
| |||||||| |||||| ||||| ||||||| ||||||||||| |||||||||||||||
Sbjct 2968 ACCATCTCCAAAGCTTGAGGAAAGATCCTCCTACTCAGATTCAAGAAGCATTTCGGAGAA 3027
Query 2261 GCTTTGATGGACTAGATGAAAACGA-AAAGAACATATTTTTGGACCTTGCATGttttttt 2319
| ||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||
Sbjct 3028 GTTTTGATGGACTAGATGAAAACGAGAAA-AACATATTTTTGGATCTTGCATGTTTTTTC 3086
Query 2320 AGAGGGG-AGAACATAGATCATGTGGTGAAATTACTTGATGCTTGTGGGTTTTTTACGTA 2378
|| |||| ||| || |||| ||| |||| |||||||||||||||||| |||||||| ||
Sbjct 3087 AG-GGGGCAGAGCAAAGATTATGCGGTGCTATTACTTGATGCTTGTGGTTTTTTTACATA 3145
Query 2379 TTTGGGAATCTGTGATCTCATTGACGAGTCTCTCATTAGCCTTTTGGACAATAGGATAGA 2438
| ||||||||||||| |||||||||||||| |||||||||||| | ||||| | ||||||
Sbjct 3146 TATGGGAATCTGTGAGCTCATTGACGAGTCACTCATTAGCCTTGTAGACAACAAGATAGA 3205
Query 2439 GATCCCTATTCCTTTTCAAGACATTGGTCGATTTATTGTTCATGAAGAAGACGAGGATCC 2498
||| |||||||||||||||||||| || ||| ||||||||||||||||||| ||||||||
Sbjct 3206 GATGCCTATTCCTTTTCAAGACATGGGCCGAATTATTGTTCATGAAGAAGATGAGGATCC 3265
Query 2499 TTGCGAACGTAGCAGATTGTGGGACTCTAATGACATCGCTGATGTTTTGAGAAACAATTC 2558
|| ||||||||||||||||||||||| || ||||||| ||||||||||| |||||||||
Sbjct 3266 ATGTGAACGTAGCAGATTGTGGGACTCGAAGGACATCGTTGATGTTTTGACAAACAATTC 3325
Query 2559 AGGAACTGAAGCAATTGAAGGCATCTTCCTGGATGCGTCTGTCCTGACCTGTGAG-TTGA 2617
|||||| ||||||||||| |||||||||||||||||||||| | ||||||| ||| || |
Sbjct 3326 AGGAACAGAAGCAATTGAGGGCATCTTCCTGGATGCGTCTGACTTGACCTGCGAGCTT-A 3384
Query 2618 GTCCTACTGTGTTTGGTAAGATGTATAATCTTAGATTGCTGAAGTTCTATTGTTCCACCT 2677
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 3385 GTCCTACTGTGTTTGGTAAGATGTATAATCTTAGATTGCTGAAGTTCTATTGTTCAACCT 3444
Query 2678 CTGAGAATGAGTGTAAGCTAAGTCTACCTCAAGGCCTCGACACTTTGCCTGATGAGCTAA 2737
||| ||| |||| ||||| | ||||||||| ||||| ||||||||||||||||||||||
Sbjct 3445 CTGGGAACCAGTGCAAGCTTACTCTACCTCACGGCCTAGACACTTTGCCTGATGAGCTAA 3504
Query 2738 GGCTACTTCACTGGGAGAACTACCCTCTGGAATACTTGCCTCATAAATTTAATCCTGAGA 2797
| ||||||||||||||||| |||||||||| ||||||||||| ||||||||||||| ||
Sbjct 3505 GTCTACTTCACTGGGAGAATTACCCTCTGGTTTACTTGCCTCAGAAATTTAATCCTGTGA 3564
Query 2798 ACCTTGTAGAGATAAACATGCCATATAGCAACATGGAAAAGTTATGGGAAGGAAAGAAAA 2857
||||||||||| |||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 3565 ACCTTGTAGAGTTAAACATGCCTTATAGCAACATGGAGAAGTTGTGGGAAGGAAAGAAAA 3624
Query 2858 ATCTTGAGAAGCTAAAGAATATCAAATTGAGTTACTCCAGAAAATTGACTGATATCCTGA 2917
|||| |||||||||||||| |||||| ||||| |||||||| |||| |||||||||||||
Sbjct 3625 ATCTCGAGAAGCTAAAGAACATCAAACTGAGTCACTCCAGAGAATTAACTGATATCCTGA 3684
Query 2918 TGTTATCAGAAGCCCTGAACCTTGAACATATTGATCTCGAAGGGTGTACAAGTCTGATTG 2977
|||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||
Sbjct 3685 TGTTATCAGAAGCCCTGAACCTGGAACACATTGATCTCGAAGGGTGTACGAGTCTGATTG 3744
Query 2978 ATGTTAGCACATCTATTCGCCATCTTG-GG-AAGCTTGTTTCCTTGAATATGAAAGACTG 3035
||||||||| ||||||| | | ||| || |||||||||||||||||||||||||||||
Sbjct 3745 ATGTTAGCATGTCTATTC-CT-TGTTGTGGGAAGCTTGTTTCCTTGAATATGAAAGACTG 3802
Query 3036 TTCCCGTTTGCAAACTCTGCCGTCCATGGTCAATTTAACATCTCTCAAGCGCCTTAATTT 3095
||| ||||||| || |||||| || ||||| |||||||| ||||||||| ||||||||
Sbjct 3803 TTCTCGTTTGCGAAGTCTGCCTTCTATGGTTGATTTAACAACTCTCAAGCTTCTTAATTT 3862
Query 3096 TTCTGGCTGCTCAGAGCTTGATGAGATCCAGGATTTTGCACCAAACCTGGAAGAGTTACA 3155
|||||||||||||| |||| || || ||||||||||||||||||||||||||| || |
Sbjct 3863 GTCTGGCTGCTCAGAATTTGAGGATATTCAGGATTTTGCACCAAACCTGGAAGAGATATA 3922
Query 3156 TCTAGCTGGGTC-TGCCATTAGAGAAATTCCATTCTCAATCTAG-AATCTCACTGAACTT 3213
|||||||||| | | |||||||||| |||| || |||||| || |||||||||||||||
Sbjct 3923 TCTAGCTGGGACAT-CCATTAGAGAGCTTCCGTTGTCAATC-AGGAATCTCACTGAACTT 3980
Query 3214 GTTACGCTAGATCTGGAGAACTGCAGAA-GGCTTCAG-AAACTGCC 3257
|||||||||||||||||||||||| ||| |||||||| ||| ||||
Sbjct 3981 GTTACGCTAGATCTGGAGAACTGC-GAAAGGCTTCAGGAAA-TGCC 4024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 167657923506
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5