BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890243
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19350.1 | Symbols: EMB3006 | embryo defective 3006 | chr4:1... 771 0.0
> AT4G19350.1 | Symbols: EMB3006 | embryo defective 3006 | chr4:10562023-10563757
REVERSE LENGTH=815
Length=815
Score = 771 bits (417), Expect = 0.0
Identities = 503/545 (92%), Gaps = 4/545 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAAACCGGGTGATGAAACGGATATTCCGGGTTCTAGACGAACGAATCTGAAGAAA 60
||||||||||||||| |||||||||||||| ||||||| |||||||| |||||||||||
Sbjct 82 ATGGAGAAACCGGGTCATGAAACGGATATTGCGGGTTCAAGACGAACCCATCTGAAGAAA 141
Query 61 TCATTCAAATCCAGTCTTCGATC-TCTTCTCACTGCTTGCTCCAAACAGGATTTTCTTGA 119
||||||||||||| ||||||| | ||||||||||||||||||||||||||||||| ||||
Sbjct 142 TCATTCAAATCCACTCTTCGA-CATCTTCTCACTGCTTGCTCCAAACAGGATTTTGTTGA 200
Query 120 CATTTTCTCGAAATTCAGTGGAGCTGAGCAAGAACTGCTTTTTCAGTTTTATACTCAGGT 179
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||
Sbjct 201 TATTTTCTCGAAATTCAGTGGGGCTGAGCAAGAACTGCTTTTTCAGTTGTATACTCGGGT 260
Query 180 TGTTGTGAATTTGCATCAGACAATAGAGGATGAGTTTGATGAACAATGTCACGAAGCTCA 239
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 261 TGTTGTGAATTTGCATCAGACAATAGAGGAAGAGTTTGATGAACAATGTCACGAAACTCA 320
Query 240 GGTTGGACCAATTCTTGATACAGTTGAGCAGCTTGTCGAAGAACAGAGTTTGGATCCCTT 299
||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct 321 GGTCGGACCAATTCTTGATACAGTCGAGGAGCTGGTCGAAGAACAGAGTTTGGATCCCTT 380
Query 300 ATTTTCAGATAAGACGGATGTTATGGCAATAGCAAATAATCTTACAACAGCGAAGAAGAA 359
||||| |||||||| ||||| |||||||||||| || ||||||||||| | ||||||||
Sbjct 381 GTTTTCTGATAAGACTGATGTAATGGCAATAGCATATGATCTTACAACATCTAAGAAGAA 440
Query 360 CGAGATACAAAGGTTAACAGGTTTGCTCCAAAGGGCTGAAGAACAGAATCGCCAGAAGGA 419
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 441 CGAGATACAAAAGTTAACAGTTTTGCTCCAAAGGGCTGAAGAACAGAATCGCCAGAAGGA 500
Query 420 AGCCCGAATCAGCCTGCTCAAAAAACAAACACAAGATTTCTCAGGCACAACTGACAGAGT 479
|||||| |||||| ||||||||||||||||||||||| ||||||||||| | |||||| |
Sbjct 501 AGCCCGGATCAGCATGCTCAAAAAACAAACACAAGATCTCTCAGGCACAGCGGACAGAAT 560
Query 480 CGAAAAGCTAAAAGCTCGGT-TCTCGGGCTACTTTGAAGGAAAGGACAAGCTACCTCCAA 538
||||||||| || || ||| |||| ||||||||||||||||| ||||||||||||||||
Sbjct 561 CGAAAAGCTGAATGC-CGGGGTCTCCGGCTACTTTGAAGGAAAAGACAAGCTACCTCCAA 619
Query 539 TATAG 543
|||||
Sbjct 620 TATAG 624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26021288146
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5