BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890262
Length=2367
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19090.1 | Symbols: | Protein of unknown function (DUF594) ... 863 0.0
> AT4G19090.1 | Symbols: | Protein of unknown function (DUF594)
| chr4:10449900-10452757 FORWARD LENGTH=2256
Length=2256
Score = 863 bits (467), Expect = 0.0
Identities = 625/702 (89%), Gaps = 8/702 (1%)
Strand=Plus/Plus
Query 1672 AAA-TCCCAGAATCTATACAGCCTGGAGAATACCAAAACAAAATCCA-CGGCCAGGAGAG 1729
||| ||||||| ||||||||||||||||||||||| |||||||| || |||| |||||||
Sbjct 1557 AAATTCCCAGATTCTATACAGCCTGGAGAATACCACAACAAAAT-CATCGGCTAGGAGAG 1615
Query 1730 GTTGGGCATCAAGCGATACCCAGATTCAAATAGCAGATAATGAAATGCTATTGCATTACA 1789
||||||||| ||| |||||||||||||||||||||| |||| ||||| | |||||||
Sbjct 1616 ATTGGGCATCTAGCCATACCCAGATTCAAATAGCAGACCATGATATGCTGCTACATTACA 1675
Query 1790 TAAGAGATGTTGATTATGACCATAGTCTTTTGATTTGGCACATTGCCACCGAGCTATGTT 1849
||| ||||||||||||||| || |||||||||||||||||||| ||||| || || ||||
Sbjct 1676 TAACAGATGTTGATTATGAACACAGTCTTTTGATTTGGCACATCGCCACAGAACTCTGTT 1735
Query 1850 ACCAAGAAGAAGCTTCCACCAATGAGAACTGCGATAAATATGAGTATCAGACTGACCGTG 1909
||||||| |||| ||| | || ||||||||||| |||| ||||||||| ||| ||||
Sbjct 1736 ACCAAGAGGAAGATTCTGCTAAAGAGAACTGCGACAAATCTGAGTATCACACTAACCGCA 1795
Query 1910 AGATCAGCAAAATCCTCTCGGACTACATGATGTATCTCTTGATCATGCAGCCCAAGCTGA 1969
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1796 AGATCAGCAAAATCATCTCGGACTACATGATGTATCTCTTGATCATGCAGCCTAAGCTGA 1855
Query 1970 TGTCAGAGGTAGCTGGCATAGGAAAGATCAGATTCAGAGACACATTGGCCGAAGCTGAGA 2029
||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 1856 TGTCAGAAGTAGCTGGCATAGGAAAGATCAGATTCAGAGACACATTAGCCGAGGCTGATA 1915
Query 2030 GATAT-TTCAAGAAGATGGGTATCAT-A-A-ACTCTAGGAGCGTGAAATTAGCCAGTGAG 2085
| | | |||||||||||||||||||| | | ||||||| | |||||||||||||| ||
Sbjct 1916 GGT-TCTTCAAGAAGATGGGTATCATCAGAGACTCTAGAAATGTGAAATTAGCCAGCAAG 1974
Query 2086 AAAATTCTTTCAGTCGATACCAGCATCGAACCAAGGGATGTCAAAGGAAATCATAGCAAA 2145
|||||||||||| |||||| || |||||||| ||||| |||||||||||||||||||||
Sbjct 1975 GAAATTCTTTCAGCCGATACAAGTATCGAACCTAGGGAAGTCAAAGGAAATCATAGCAAA 2034
Query 2146 TCAGTTTTATTTGAGGTAAGTTCAGTGGCCAAAGAACTTCAGAAAATGGAGAAGGATTTT 2205
||||| |||||||||| ||| ||| |||||||||||||||||| | |||| ||| | |||
Sbjct 2035 TCAGTGTTATTTGAGGCAAGCTCACTGGCCAAAGAACTTCAGAGAGTGGAAAAGAACTTT 2094
Query 2206 GGAAAAGACAAATGGAAGATACTTAGCAAAGTGTGGTTGGAGTTCCTCTTCCACGCAGCA 2265
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2095 GGAGAAGACAAATGGAAGATACTTAGCAAAGTGTGGTTGGAGTTCCTCTTCCATGCAGCA 2154
Query 2266 TCCCATTGTGACGGTACAACACGTTTGGAGCTTCTAAGCAAAGGTGGAGAGTTCATAAAC 2325
|| |||||||| | ||||||||| |||||||||| ||||||||||| |||||||| |||
Sbjct 2155 TCACATTGTGATGCAACAACACGTATGGAGCTTCTTAGCAAAGGTGGGGAGTTCATCAAC 2214
Query 2326 TTCGTTTGGCTACTAATGGCTCACTTTGGCCTAGGGGATTGA 2367
||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2215 TTCGTTTGGCTACTAATGGCTCACTTTGGCCTAGGGGGTTGA 2256
Score = 573 bits (310), Expect = 3e-162
Identities = 449/515 (87%), Gaps = 14/515 (3%)
Strand=Plus/Plus
Query 200 CATTGATTGCCAAGAACCAAGGTAAAGCCCCTAAACCCGATGATCCTCCGCAAAATAAGA 259
|||||||||||||||||||||||||| | |||||| ||||||||||| ||||| ||||
Sbjct 182 CATTGATTGCCAAGAACCAAGGTAAATATCTTAAACCTGATGATCCTCCTCAAAACAAGA 241
Query 260 AGCTCGTCGCCTTGTGGGCACCTTTCTTGCTCTTACACCTTGGTGGACCAGACACCATCA 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 AGCTCGTCGCCTTGTGGGCACCTTTCTTGCTCTTACACCTTGGTGGACCAGACACCATCA 301
Query 320 CTGCGTTTTCCCTCGAAGACAATGCTCTTTGGAACAGACATTTTCTTGGCCTTATCTTTC 379
|||| ||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||
Sbjct 302 CTGCCTTTTCCCTCGAAGACAATGCTCTCTGGAACAGACATTTTCTTGGGCTTGTCTTTC 361
Query 380 AGGCACTTGCAGGTGTATATGTGGTTGTCCAGTCTCTACCCAATGTGCTTTGGGTGATGA 439
|||| ||||||||||||||||| ||||||||||||||||||||||| || | |||||| |
Sbjct 362 AGGCGCTTGCAGGTGTATATGTAGTTGTCCAGTCTCTACCCAATGTACTCTCGGTGATAA 421
Query 440 TACT-GTTGCTGTTCATTTCTGGGACTTCTAAGTATCTGGAAAGGACAATTGCGTTGTAC 498
| || |||||| |||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 422 T-CTTGTTGCTTTTCATTGCTGGGACTTCTAAGTATTTGGAACGGACAATTGCGTTGTAC 480
Query 499 CTCGCAAGTTCAGACAAGTTCAGGGGCTCGATGTTGCAGGCTTCCAAT-CTAGGGTTTGA 557
||||| ||||||||||||| |||| ||||||||||||||| |||||| | ||| |||||
Sbjct 481 CTCGCGAGTTCAGACAAGTACAGGAACTCGATGTTGCAGGCGTCCAATTCAAGG-TTTGA 539
Query 558 AAACAACGAGCAAACAAAGAACCTAGATACGGACTCAATAA-TTGCATCTGAGATGTACA 616
||| ||| ||||||| | || |||| | |||| | | || |||| ||||||||| |||
Sbjct 540 CTACACCGATCAAACAAGGGACTTAGACATGGACACGA-AACTTGCTTCTGAGATGAACA 598
Query 617 TGAAGGAGAACCGCGGACAGCCGAAACCTCTGAAACTCAT-GTTTCC-CGATA--GACGC 672
|||||||| | |||||||| || ||||||||||| | || | || | ||| || |
Sbjct 599 TGAAGGAGCATCGCGGACAACCAAAACCTCTGAAGTT-ATTGCAACCAC-ATAAAGA-G- 654
Query 673 TTGACCCACCTTGAAATTCTTCAATATGCTTTCTT 707
|| ||||||||||| |||||||||||||| |||||
Sbjct 655 TTAACCCACCTTGAGATTCTTCAATATGCATTCTT 689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117519475845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5