BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890279
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18990.1 | Symbols: XTH29 | xyloglucan endotransglucosylase/... 1712 0.0
> AT4G18990.1 | Symbols: XTH29 | xyloglucan endotransglucosylase/hydrolase
29 | chr4:10401910-10404248 REVERSE LENGTH=1105
Length=1105
Score = 1712 bits (927), Expect = 0.0
Identities = 1027/1076 (95%), Gaps = 4/1076 (0%)
Strand=Plus/Plus
Query 1 ATGAGAGATTCAATCTATTTTTTCTGGATTAATAATCGATTAATAGTAATAATTATGATG 60
|||||||||||||||||| |||| |||||| ||||||||||| | |||||||||||||||
Sbjct 1 ATGAGAGATTCAATCTATCTTTTATGGATTGATAATCGATTAGTGGTAATAATTATGATG 60
Query 61 GTGATGATCATATCATGTAGATGTGTTTTAGGATTGGAGAACATAAATCCGATATTCTTC 120
|||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 61 GTGATGATGGTATCATGTAGATGCGTTTTGGGATTGGAGAACATAAATCCGATATTCTTC 120
Query 121 GATGAAGGTCTTTCTCATTTGTTTGGTGAAGGTAATCTCATCCGATCTCCTGATGATCGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATGAAGGTCTTTCTCATTTGTTTGGTGAAGGTAATCTCATCCGATCTCCTGATGATCGT 180
Query 181 AGCGTTCGATTACTCCTCGACAAATACACTGGGTCCGGATTTATCTCTTCAAGCATGTAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGCGTTCGATTACTCCTCGACAAATACACTGGGTCCGGATTTATCTCTTCAAGCATGTAT 240
Query 241 CAACATGGGTTTTTTAGTTCGTTGATAAAGTTGCCAGGAGCTTACACGGCTGGTATCGTC 300
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 CAACATGGGTTTTTCAGTTCGTTGATAAAGTTGCCAGGAGCGTACACGGCTGGTATCGTC 300
Query 301 GTCGCCTTCTATACATCAAATGGCGATGTGTTTGTGAAGAACCATGACGAACTAGACATA 360
||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 301 GTCGCTTTCTATACATCAAATGGTGATGTGTTTGTGAAGGACCATGACGAACTAGACATA 360
Query 361 GAGTTTTTAGGGAACCTAGAAGGAAAGCCTTGGCGATTTCAAACGAATATGTATGGAAAC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAGTTTTTAGGGAACCTAGAAGGAAAGCCTTGGCGATTTCAAACGAATATGTATGGAAAC 420
Query 421 GGTAGCACAAACCGCGGCCGCGAAGAACGCTACCGTCTTTGGTTTGATCCTTCCAAGGAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGTAGCACAAACCGCGGCCGCGAAGAACGCTACCGTCTTTGGTTTGATCCTTCCAAGGAG 480
Query 481 TTTCACCGTTATAGCATCCTTTGGACCCCTACCAAAATTATATTTTGGGTAGATGATGTA 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 481 TTTCACCGTTATAGCATCCTTTGGACCCCTACCAAAATAATATTTTGGGTAGATGATGTA 540
Query 541 CCAATAAGAGAAATCATAAGAAAAGAAGAAATGGAA-GGAGACTATCCTCAAAAACCAAT 599
||||||||||||||| |||||||||| |||||| || ||||||||||| ||||| |||||
Sbjct 541 CCAATAAGAGAAATCCTAAGAAAAGAGGAAATG-AATGGAGACTATCCACAAAAGCCAAT 599
Query 600 GTCTCTATATGCAACCATTTGGGACGCCTCAAGCTGGGCTACTTCCGGTGGAAAATTCGG 659
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 GTCTCTCTATGCAACCATTTGGGACGCCTCAAGTTGGGCTACTTCCGGTGGAAAATTCGG 659
Query 660 CGTCGATTATACATATTCACCTTTTGTCTCCGAATTCAAAGATATAGCGCTCGACGGTTG 719
|||||| || |||| |||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 660 CGTCGACTACACATTTTCACCTTTTGTTTCCGAATTCAAAGATATAGCCCTCGACGGTTG 719
Query 720 TAATGTCTCTGACTCACTTCCA-GGAGAAATCAACAACAACAACATCGGTAATTATAATA 778
|||||||||||||||| |||| ||||||| |||||||||||||||||||||||| ||||
Sbjct 720 TAATGTCTCTGACTCA-TTCCCCGGAGAAAACAACAACAACAACATCGGTAATTACAATA 778
Query 779 ACATCAATTGCTCTGTCTCCGACCAATTTCTCATGACCAACGACTACTCAACCATTAGTC 838
|||| ||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 779 ACATAAATTGTTCTGTCTCCGACCAATTTCTCATGAGCAATGACTACTCAACCATTAGTC 838
Query 839 CTAAACAAGCAGCCGCTATGCGACGGTTCCGAGAACGTTATATGTATTATTCGTATTGTT 898
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CTAAACAAGCAACTGCTATGCGACGGTTCCGAGAACGTTATATGTATTATTCGTATTGTT 898
Query 899 ACGACACCATTCGATACTCGGTGCCTCCGCCAGAGTGTGTTATTGTGACGGCTGAAAAGA 958
| |||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct 899 ATGACACCATTCGATACTCGGTGCCTCCACCGGAGTGTGTTATTGTGACGGCTGAGAAGA 958
Query 959 ACCGGTTTAGGGATACTGGACGGTTAAAGTTTGGTGGTAGTCATCCTAAAGTGCATAAAG 1018
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ACCGGTTTAGAGATACTGGACGGTTAAAGTTTGGTGGTAGTCATCCTAAAGTGCATAAAG 1018
Query 1019 CAAGGAAGAGACGGCGACGGAATCGGTCCACGCCGGTTGTATCGGCTGATCTATAG 1074
|| | |||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1019 CACGTAAGAAACGGCGACGGAATCGGTCTACGCCGGTTGTATCGGCTGACCTATAG 1074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52610171160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5