BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890287
Length=774
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18920.1 | Symbols: | Protein of unknown function (DUF1264)... 582 1e-165
> AT4G18920.1 | Symbols: | Protein of unknown function (DUF1264)
| chr4:10368755-10370212 FORWARD LENGTH=899
Length=899
Score = 582 bits (315), Expect = 1e-165
Identities = 353/372 (95%), Gaps = 0/372 (0%)
Strand=Plus/Plus
Query 1 ATGGCATCGAGTGATAAGGTTCCAGTGGCGTGTCCGGCAAGCAGCGGAGATGGAAAGGAG 60
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 30 ATGGCATCGAGTGATAAGGTTCCGGTGGCGTGTCCGGCAAGCAGTGGAGATGGAAAGGAG 89
Query 61 CCAATGGGAGATCCGACGAAGACCACTACGGCGATGCTCGATAAAGGAACGGCTATGATG 120
||||||||| |||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 90 CCAATGGGAAATCCGACGAAAACCACTACGGCGATGCTAGAGAAAGGAACGGCTATGATG 149
Query 121 CAATCGATGAAACCGATCAGGCAAATGAGCCTTCACGTGTGTTCATTTGCTTGCTATAGC 180
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 150 CAATCGATGAAACCGATCAGGCAAATGAGCCTCCACGTGTGTTCATTCGCTTGCTATAGC 209
Query 181 CACGATCCTGGCCGTCAGATCGAAGTTCATATCTACGGCCAACGTGTAAACCAGGACTTC 240
|| ||||| || |||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 210 CATGATCCCGGTCGTCAGATCGAAGTTCATATTTACGGCCACCGTGTAAACCAGGATTTC 269
Query 241 CTCCAATGTGCTGTCTACGATTCCAATTCCTCTAAGGCTCATCTCATAGGGATAGAATAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 270 CTCCAATGTGCTGTCTACGATTCCAATTCCTCTAAGGCTCATCTCATAGGGATCGAATAT 329
Query 301 ATTGTGTCGGAGAAGTTATTCGAGAGTCTCCCACCGGAGGAACAAAAGCTTTGGCACTCG 360
|| |||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 330 ATAGTGTCGGAAAAGTTATTCGAAAGTCTCTCACCGGAGGAACAAAAGCTTTGGCACTCG 389
Query 361 CATGATTACGAG 372
||||||||||||
Sbjct 390 CATGATTACGAG 401
Score = 575 bits (311), Expect = 2e-163
Identities = 349/368 (95%), Gaps = 0/368 (0%)
Strand=Plus/Plus
Query 403 ATCCAAATGGCTCTTCTAGTAACTCCAAGGGTCCCGGAGCTCGTTGCCAAGCCCGAGCTT 462
||||||||||||||||||||||||||||||||||| ||||||||||| || || ||||||
Sbjct 402 ATCCAAATGGCTCTTCTAGTAACTCCAAGGGTCCCTGAGCTCGTTGCGAAACCGGAGCTT 461
Query 463 AAAAATCTTGCCAAATCTTACGGAAAATTTTGGTGTACATGGCAGATAGACCGAGGGGAT 522
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 462 AAAAATCTTGCCAAATCTTACGGGAAATTTTGGTGTACATGGCAGATTGACCGAGGGGAT 521
Query 523 AGATTGCCACTAGGTGTACCATCACTAATGGTGTCGCCACAAGACGTGAATCTAGGGAGA 582
| ||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 522 AAATTACCACTAGGTGTACCATCACTAATGGTATCGCCACAAGACGTGAATCTCGGGAGA 581
Query 583 ATAAAACCGGAGCTGGTGAAAAAGAGAGATGAAGAACATGGAATCTCGACGGAATCATTG 642
|| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 582 ATCAAACCGGAGTTGGTGAAAAAGAGAGATGAAGAACATGGAATCTCGACTGAATCGTTG 641
Query 643 AAGCCGTCAAGAGATGGGATCAGTGGACCGGAGAAGAAGAATCTGGTCGCTGATTATTGG 702
||||||||||||||||||||| ||||||| ||||||||||| ||||| ||||||||||||
Sbjct 642 AAGCCGTCAAGAGATGGGATCTGTGGACCAGAGAAGAAGAACCTGGTTGCTGATTATTGG 701
Query 703 GTTAGGTTTAGGAAAGGCTTTGCGCTTGATGTTGTTGAGACAGATATGAAGAGAACAGCT 762
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 702 GTTAGGTTTAGGAAAGGCTTTGCGCTTGATGTTGTTGAAACAGATATGAAGAGAACAGCT 761
Query 763 CCCTTCCC 770
||||||||
Sbjct 762 CCCTTCCC 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37625376103
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5