BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890302
Length=888
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18870.1 | Symbols: | E2F/DP family winged-helix DNA-bindin... 1029 0.0
> AT4G18870.1 | Symbols: | E2F/DP family winged-helix DNA-binding
domain | chr4:10346168-10347228 FORWARD LENGTH=878
Length=878
Score = 1029 bits (557), Expect = 0.0
Identities = 731/812 (90%), Gaps = 24/812 (3%)
Strand=Plus/Plus
Query 17 AAAATGAAGGTTCATCAACCTCAATATCAAATTTCATCACCACAACATATGATATGGTCG 76
||||||||||||||| ||||||| ||||| |||||||||||||||| |||||||||||||
Sbjct 9 AAAATGAAGGTTCATTAACCTCAGTATCATATTTCATCACCACAACGTATGATATGGTCG 68
Query 77 ATGATCTTTCATCAGATTCAATAATTTCTTGGAGCCAGAGCGGCAAGAGTTTCATTATTT 136
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 69 ATGATCTTTCATTAGATTCAATAATTTCTTGGAGCCAGAGCGGCAAGAGTTTCATCATTT 128
Query 137 GGAATCCAGAAGAATTTTACAACAAT-TTCCTTCAAAGATTCTGTTTCCAAGGCGACAAT 195
|||||||||||||||||||||||||| || |||||||||||||| |||||| || |
Sbjct 129 GGAATCCAGAAGAATTTTACAACAATCTT-CTTCAAAGATTCTGCTTCCAA--CG-C--- 181
Query 196 ATAAATTCCTTTTTCTCTTACCTTAATTCACATGGTTTTAGAAAAATCGACTCTGGAAAC 255
|||||| |||||||||||| |||| |||||||||||| ||||||||||||||||||||
Sbjct 182 ATAAATACCTTTTTCTCTTTCCTTTTTTCACATGGTTTCAGAAAAATCGACTCTGGAAAA 241
Query 256 TGGGAATTCGCAAATGATAATTTCGTGCGAGGTCAACCTCACCTCATAAATAATACTATA 315
||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| | ||||
Sbjct 242 TGGGAATTCGCGAATGATAATTTTGTGCGAGGTCAACGTCACCTCATAAATAACATTATA 301
Query 316 AGTTG-TGTAATAGAG-GGGAGGGTTCTATATGAGGAAAGTATGG-ATATGTTT-AAGGT 371
|| || |||||||||| ||| ||||| |||||| || | |||| || ||||| |||
Sbjct 302 AG-TGATGTAATAGAGCAGGA-GGTTCAATATGATCAAGGAATGGAAT-TGTTTAAAGCA 358
Query 372 GAGAAAATTATTTG-AGCGGCAAGT-AAAAGAAGTAGAGGATCAATTGCCACCTCATAAC 429
|| ||||||||||| | || | ||| |||| ||||| |||||||||||||||||||||||
Sbjct 359 GA-AAAATTATTTGCA-CGACTAGTGAAAA-AAGTACAGGATCAATTGCCACCTCATAAC 415
Query 430 AGTTATCCAACCTCAAAACGTCCTTTTCCCACCAAACTCTATGAGATGGTGGACGATCCT 489
||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||
Sbjct 416 AGTTATCCAACCTCAAAACTTCCTTTCCCCACCAAAATCTATGAGATGGTGGACGATCCT 475
Query 490 TCGTCGGATGCTATTATTTCATGGAGCCAGAGTGGCAGGAGTTTCATCATTTGGAATCCA 549
|| |||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 476 TCATCGGATGCTATTATCTCATGGAGCCAAAGTGGCAAGAGTTTCATCATTTGGAATCCA 535
Query 550 AAAGAATTTTGCAAAGATCTTCTTCGTAGATTCTCCAATACCCTCCATATACCTTTATTC 609
|||||||||||||||||| |||||||||| ||| ||||||||||||||||| ||| |||
Sbjct 536 CAAGAATTTTGCAAAGATCATCTTCGTAGACTCTTCAATACCCTCCATATACATTTTTTC 595
Query 610 TTCCATAAACTTCAAAGATTTAGTTTCaaaaaaaTTGATCCAAAGAAATGGGAATTCGCA 669
||| |||||||| ||| |||| |||||||||||||| ||||||||||||||||||| |||
Sbjct 596 TTCTATAAACTTAAAATATTTGGTTTCAAAAAAATTAATCCAAAGAAATGGGAATTTGCA 655
Query 670 AATGATAATTTTGTTCGGGGTCAATGTCACCTTGTGGAAATCATTATAAGCAATGA-AAA 728
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 656 AATGATAATTTTGTCCGGGGTCAACGTCACCTTGTGGAAATCATTATAAGCAATGATAAA 715
Query 729 AGAGAAGATTGATCAACTACGTAAA-AGATATGACAGACAGAAAAAACTGGGGGAGGCAA 787
| |||||| |||||||||||||||| || ||| |||| |||||||| ||| |||||||
Sbjct 716 A-AGAAGAATGATCAACTACGTAAACAGG-ATGCCAGAGAGAAAAAAATGGCGGAGGCAG 773
Query 788 GAGAATTGTTTAAGTTGCAAATTGAGGAAATG 819
||||||||||||||||||||||||||||||||
Sbjct 774 GAGAATTGTTTAAGTTGCAAATTGAGGAAATG 805
Score = 65.8 bits (35), Expect = 7e-10
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 823 AAGGCCAAGGAAGTAAAGGAACAAGAGGTTCGACT 857
|||||||||||||||||||||||||||||||||||
Sbjct 830 AAGGCCAAGGAAGTAAAGGAACAAGAGGTTCGACT 864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43352068861
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5