BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg890303

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G18860.1 | Symbols:  | unknown protein; Has 4 Blast hits to ...   196    1e-49


> AT4G18860.1 | Symbols:  | unknown protein; Has 4 Blast hits to 
4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 
0 (source: NCBI BLink). | chr4:10344687-10345588 FORWARD LENGTH=294
Length=294

 Score =  196 bits (106),  Expect = 1e-49
 Identities = 150/171 (88%), Gaps = 3/171 (2%)
 Strand=Plus/Plus

Query  271  AAACACAATGTTGCTCTTCACTTCCGCAGTTTTATCCACCGTTTAATTTGGCTCAAAGCC  330
            ||||||||| |||||||||| ||||| |||||||| ||||  || | |  || |||||||
Sbjct  106  AAACACAATCTTGCTCTTCAATTCCGTAGTTTTAT-CACCAATT-A-TCCGCCCAAAGCC  162

Query  331  CTAGACTTTGACTCGTCTTCCGCAGTATCCGATATGGGTTTTGCGGAATCAGAAACAGGA  390
            |||| ||||||||| |||||||||||||||||| | |||||| |||||||||||||||| 
Sbjct  163  CTAGTCTTTGACTCATCTTCCGCAGTATCCGATCTAGGTTTTACGGAATCAGAAACAGGG  222

Query  391  TCATCAACTAGGGTTTTGGGAAAATCAGCGTCTTGGATTTTCATTTTCTTC  441
             | ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct  223  GCTTCAACCAGGGTTTTGGGAAAATCAGCGTCTTGGATCTTCATTTTCTTC  273



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24664966177


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5