BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg890334

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G18530.1 | Symbols:  | Protein of unknown function (DUF707) ...   592    2e-168


> AT4G18530.1 | Symbols:  | Protein of unknown function (DUF707) 
| chr4:10217338-10220500 FORWARD LENGTH=1796
Length=1796

 Score =  592 bits (320),  Expect = 2e-168
 Identities = 385/417 (92%), Gaps = 2/417 (0%)
 Strand=Plus/Plus

Query  144   GCGATGTGATGACAATAGCACCAATCCTCCCTGCAAATGGTGTGTAGAAATGATGGCACC  203
             ||||||||||||| |||||||||||||||| ||||   |||| || ||||||||||||||
Sbjct  1164  GCGATGTGATGACCATAGCACCAATCCTCCTTGCATCGGGTGGGTGGAAATGATGGCACC  1223

Query  204   TGTTTTCTCTAGAGAAGCATGGAGATGTTCTTGGTATATGATTCAGAATGATTTGATCCA  263
             ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1224  TGTTTTCTCTAGAGCTGCATGGAGATGTTCTTGGTATATGATTCAGAATGATTTGATCCA  1283

Query  264   TGCTTGGGGTCTGGATACACAGCTTGGTTATTGTGCTCAAGGTGATCGAAAGAAAAATGT  323
             |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct  1284  TGCTTGGGGTCTGGATACGCAGCTTGGTTATTGTGCTCAAGGTGACCGAAAGAAAAATGT  1343

Query  324   TGGTGTTGTCGATGTGGAGTACATAATTCATTACGGTCTTCCAACGCTCGGTGTGGTTGA  383
              |||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  1344  CGGTGTTGTTGATGCGGAGTACATAATTCATTATGGTCTTCCAACGCTCGGTGTGGTTGA  1403

Query  384   AACCGCTTCAAGCTCCTCGCGGAATGAGACAGACCCGAAATCAACGGAATCATTAGAGTC  443
             ||||||||||||| | | |||||||||||||||| |||||||||||||||||||||||||
Sbjct  1404  AACCGCTTCAAGCGCTTTGCGGAATGAGACAGACTCGAAATCAACGGAATCATTAGAGTC  1463

Query  444   TCGTAAAGTGGATTATAGACCAGAAGTGAGGATGAAATC-TTCTGTAGATATGAAGACAT  502
             |||| |||||||| ||||||||||||||||||||||||| || ||| || ||||||| ||
Sbjct  1464  TCGTGAAGTGGATAATAGACCAGAAGTGAGGATGAAATCATT-TGTGGAGATGAAGAGAT  1522

Query  503   TCGTTGAACGTTGGAATAAAGCTGTGAGGGATGATAGATGTTGGGTCGATCCGTATT  559
             ||   ||||||||||| ||||||||||||||||||| ||||||||| ||||||||||
Sbjct  1523  TCAAGGAACGTTGGAAGAAAGCTGTGAGGGATGATACATGTTGGGTTGATCCGTATT  1579


 Score =  126 bits (68),  Expect = 2e-28
 Identities = 80/86 (93%), Gaps = 0/86 (0%)
 Strand=Plus/Plus

Query  53   AGAAAAGGCCAAACCATTCGATAAGTTTTTTAGCCATGGCAGTCGGAATCAAGCAAAAGG  112
            ||| |||||| ||||||||||| ||||| ||||||||||| ||||| |||||||||||||
Sbjct  713  AGAGAAGGCCTAACCATTCGATGAGTTTGTTAGCCATGGCGGTCGGTATCAAGCAAAAGG  772

Query  113  AGCTAGTTAACAAAGTTATCCAAAAG  138
            ||||||||||||||||||||||||||
Sbjct  773  AGCTAGTTAACAAAGTTATCCAAAAG  798



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26925502792


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5