BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890381
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18190.1 | Symbols: ATPUP6, PUP6 | purine permease 6 | chr4:... 1498 0.0
> AT4G18190.1 | Symbols: ATPUP6, PUP6 | purine permease 6 | chr4:10067810-10069338
FORWARD LENGTH=1438
Length=1438
Score = 1498 bits (811), Expect = 0.0
Identities = 1026/1129 (91%), Gaps = 17/1129 (2%)
Strand=Plus/Plus
Query 1 ATGGAACTAGAATCAGAAACTCAAGAACTCCATCTTCGCGTAAATGGCGAACCTGAAGGG 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 133 ATGGAACTAGAATCAGAAACTCAAGAACTCCATCTTCACGTAAATGGCGAACCTGAAGGG 192
Query 61 AAAGTTTCAACAGAAGAGAGAAGTCACAACTACTCGTGGAGGTTAAGAGTGTCTCTCTAT 120
||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 193 AAATTTTCAACAGAAGAGAGAAGTCACAAGTACTCTTGGAGGTTAAGAGTGTCTCTCTAT 252
Query 121 GTCACTCTTCTCTTAGCTGGAGAGACAATAGCCACTCTCTTAGGTAGACTTTACTATGAC 180
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 253 GTCACTCTCCTCTTAGCTGGAGAGACAATAGCCACTCTCTTAGGTAGACTTTACTACGAA 312
Query 181 AAAGGCGGTAAAAGCACATGGCTCGAGACCTTGGTTCAGCTTGTTGGGTTTCCTCTAACC 240
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||
Sbjct 313 AAAGGCGGTAAAAGCACATGGCTCGAAACCTTGGTTCAGCTTGTAGGGTTTCCTTTAACC 372
Query 241 CTTCCTTGCTATTATTACATAAAGCCTGAGCCTTCCAAGAATAAAACCATAACCAAGAAA 300
|||||||||||||||||| ||||||||||||| ||||||| ||||||||| ||||| |||
Sbjct 373 CTTCCTTGCTATTATTACTTAAAGCCTGAGCCGTCCAAGACTAAAACCATTACCAAAAAA 432
Query 301 CCTACTCCTTCCTTCTTGACACTGTCTTTAGTGTATATTGGACTTGGCTTGCTTGTTGCG 360
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 433 ACTACTTCTTCCTTCTTGACACTATCTTTAGTGTATATTGGACTTGGCTTGCTTGTTGCT 492
Query 361 GGGCACAGTGTTATGTACTCCTTTGGATTACTCTACCTTCCTGTCTCAACTTTCTCTTTG 420
|| || || || ||||||| ||||| |||| |||||||||||||||||||||||||||
Sbjct 493 GGACATTGTATTTTGTACTCATTTGGGCTACTTTACCTTCCTGTCTCAACTTTCTCTTTG 552
Query 421 ATCTCCGCGTCGCAATTGGCTTTTAATGCCGTCTTCTCTTACTTCCTAAACTCACAAAAA 480
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 553 ATCTCTGCGTCGCAATTGGCTTTTAACGCCGTCTTCTCTTACTTCCTAAACTCACAAAAA 612
Query 481 ATCACACCATTTATACTCAATTCACTTGTTCTCTTAACCATATCTTCTACACTTCTTGTT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 ATCACACCATTTATACTCAATTCACTTGTTCTCTTAACCATATCTTCTACACTTCTTGTT 672
Query 541 ATCCAACATGAGCCTGAATCTTC-TAAT-T-CTTCT---TCCTCT---AAGTCCAACTAT 591
||||||||||| || |||||| | | | | |||| ||| | |||||||| |||
Sbjct 673 ATCCAACATGAACCAGAATCTCCCTCTTCTACTTCAAAGTCCGCAGCCAAGTCCAAGTAT 732
Query 592 GTGATTGGATACATCTGCGCGATCGGTGGCTCAGCTGGTTATTCTCTGGTGCTTTCTTTA 651
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 733 GTGATTGGATACATCTGCGCGGTCGGTAGCTCAGCTGGTTATTCTCTGGTGCTTTCTTTA 792
Query 652 ACAGATTACGCGTTCGAAAAGAT-CTTAAAGAAATACACTTTTAAGGCGATTTTAGATAT 710
||||||||||||||||||||||| || |||||||||||| || ||||| |||||||| ||
Sbjct 793 ACAGATTACGCGTTCGAAAAGATTCT-AAAGAAATACACATTCAAGGCTATTTTAGACAT 851
Query 711 GGCTACATATCCATCTTTGGTAGCTACTTGTATTGTTGTGGTTGGACTTTTTGGAAGTGG 770
||| |||||||| ||| |||||||||||||| | |||||||| |||||||||||||||||
Sbjct 852 GGCCACATATCCGTCTATGGTAGCTACTTGTGTAGTTGTGGTAGGACTTTTTGGAAGTGG 911
Query 771 TGGGTGGAAAATGTTGAGTACAGAAATGCAAGAGTTTCAACTAGGGAAAAACTCTTACCT 830
||||||||||| | |||||||||||||| ||||||||||||||||||||| ||| ||| |
Sbjct 912 TGGGTGGAAAAAGCTGAGTACAGAAATGGAAGAGTTTCAACTAGGGAAAAGCTCATACAT 971
Query 831 TTTGATAA-CAATTGGTTCAACGATATCATGGCAAGCTT-TTTCAATTGGTAGTGTTGGT 888
|||||||| || | ||||||||||||||||||||||||| ||| | |||| |||||||||
Sbjct 972 TTTGATAAACA-TCGGTTCAACGATATCATGGCAAGCTTGTTTGA-TTGGAAGTGTTGGT 1029
Query 889 TTGATTCTTGAAGTTTCATCGCTTTTTTCGAATGTCATAAGTACTATATGTTTACCCGTG 948
|||||| | |||||||||||||||||||| ||||||||||| ||| | |||||||| ||
Sbjct 1030 TTGATTATCGAAGTTTCATCGCTTTTTTCCAATGTCATAAGCACTCTTTGTTTACCAGTT 1089
Query 949 GTTCCTGTTCTCGCTGTTGTGTTCTTCCGCGATGAGATGAGCCGAATCAAGTTGATTGCA 1008
|| |||||||| |||||||| |||||||| ||||||||||| ||||||||||| |||||
Sbjct 1090 GTGCCTGTTCTTGCTGTTGTCTTCTTCCGTGATGAGATGAGTGGAATCAAGTTGGTTGCA 1149
Query 1009 ATGTTTTTGGCCATATGGGGATTTGTTTCTTATGCTTACCAGCATTATGTCGATGATCGA 1068
|||||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||| ||
Sbjct 1150 ATGTTTTTGGCCATCTGGGGATTTGTTTCTTATGGTTATCAGCATTATGTCAATGATAGA 1209
Query 1069 AAACCAGAAGAAGAGCAAGAGCTTCCACAA-CATGAAGAAAAAGAAGAA 1116
|| ||||||||||| ||||||||||| || | | ||||| ||||||||
Sbjct 1210 AAGCCAGAAGAAGACCAAGAGCTTCCTCAGTC-TAAAGAAGAAGAAGAA 1257
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55019797320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5