BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890387
Length=2409
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18150.1 | Symbols: | Kinase-related protein of unknown fun... 1698 0.0
> AT4G18150.1 | Symbols: | Kinase-related protein of unknown function
(DUF1296) | chr4:10050211-10054031 FORWARD LENGTH=2518
Length=2518
Score = 1698 bits (919), Expect = 0.0
Identities = 1210/1346 (90%), Gaps = 37/1346 (3%)
Strand=Plus/Plus
Query 7 GGTCGTGGCGGCGGCGGCGTTAGTAACGCGAACGGGGGTGTTCCGGCGTCTTCGAGGAAG 66
||| |||| |||||| |||||||||||||||| || ||||||||||||||||||||||||
Sbjct 4 GGTGGTGGTGGCGGCAGCGTTAGTAACGCGAATGGAGGTGTTCCGGCGTCTTCGAGGAAG 63
Query 67 GTTGTTCAGGGTTTGAAGGAGATCGTGAACTGTTCTGAGTTAGAGATCTATGCGATGCTT 126
||| |||||| |||||||||||| ||| | ||||||||||||||||| ||||||||||||
Sbjct 64 GTTATTCAGGATTTGAAGGAGATTGTGGAGTGTTCTGAGTTAGAGATTTATGCGATGCTT 123
Query 127 GTTGAGTGCGATATGGATCCTGATGAAGCTGTTAATCGTCTCCTTTCTCAAGATACTTTT 186
||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||
Sbjct 124 GTTGAGTGCGATATGAATCCTGATGAAGCTGTTAATCGTCTTCTCTCTCAAGATACTTTT 183
Query 187 CATGAGGTGAAGAGCAAACGAGAGAAGAAGAAAGAGACTAAAGACCCTGCAGACTCCTGG 246
|||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 184 CATGAGGTGAAGAGTAAACGAGAGAAAAAGAAAGAGACTAAAGACCATGCAGACTCCTGG 243
Query 247 ACGCGTAACGTCCCGAATCGTGGAGCTAGAAGCGGTAATGACAGTTACAACACATCTCGA 306
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 244 ACGCGTAATGTCCCGAATCGTGGAGCTAGAAGCGGTAATGACAGTTACAATACCTCTCGA 303
Query 307 GGTGGCGGAAACAAGTATAATTCTAATGAGACGGGGAATGTTCATCATGGTGTACCTGCA 366
|||||| ||||||||||||| ||||||||||| || || |||| | ||||||||||
Sbjct 304 GGTGGCAGAAACAAGTATAAATCTAATGAGACAGGAAAAATTCA--A-GGTGTACCTGTG 360
Query 367 AACAGAAGAGAAAACGGAGCACGTAATCATTGGGCAGGATCTTCTGTATCATCTGG--TG 424
|| |||||||||||||||||||||||||||| ||| |||||||||| ||||||||| ||
Sbjct 361 AATAGAAGAGAAAACGGAGCACGTAATCATTTGGCTGGATCTTCTGCATCATCTGGTTTG 420
Query 425 --T----G-----C----TTG----GACGCCAACCTCCATCAAACAGTGATCCTCCAAGC 465
| | | ||| |||||||||| |||||||||||||||| |||||||
Sbjct 421 CTTGGACGCCTACCTGGTTTGCTTAGACGCCAACCACCATCAAACAGTGATCTTCCAAGC 480
Query 466 TCTGAAGTCAAGAAAGCACCAACAG-GCCCGAGTGATGCAGTTACTTCGTCTTCGCTGCC 524
||| ||||||||||||||||||| | ||| |||||||||||||||| ||||||| ||||
Sbjct 481 TCTAAAGTCAAGAAAGCACCAAC-GACCCCCAGTGATGCAGTTACTTTGTCTTCGTTGCC 539
Query 525 TTCTCCTGCGTATCAATCCGCTTGGGCCAGTGCTAACCCCGGACAAAGAACTATGGCTGA 584
|| ||||||||||||||| |||||||| || |||||||| || |||||||||||||||||
Sbjct 540 TTTTCCTGCGTATCAATCAGCTTGGGCTAGCGCTAACCCTGGGCAAAGAACTATGGCTGA 599
Query 585 GATTGTGAAAATGGGTAGGCCTAACCAGCAGAAGAATGTTGCTTTGCCTCGTTCATCAGA 644
||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||
Sbjct 600 AATTGTGAAAATGGGTAGACCTAACCTGCAGAAGAATGTCGCTTTGCCTCGTTCATCAGA 659
Query 645 GGCTCAAGAGAGCGGAAGTAAAGCCCCTTTGAAGGATGAATGGCCTTCAATTGAGAAGCA 704
||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 660 GGCTCAAGAGAGCAGCAGTAAAGCCCCTTTGAAGGATGAATGCCCTTCAATTGAGAAGCA 719
Query 705 AGATGTTTCTTATCCATCATCCTCTGTCTTGAAACCATCTGCTGAATCTAAGATTTCTGC 764
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 720 AGACGTTTCTTATCTATCATCCTCTGTCTTGAAACCATCTGCTGAATCTAAGATTTCTTC 779
Query 765 CGACCAATTTAGTGAGTCTCAACATCTGGATGAGACTCATTTGGATGACCA-CCACCACG 823
||||||||||||||||||||||||| |||||||||||| |||||||||| | ||||| ||
Sbjct 780 CGACCAATTTAGTGAGTCTCAACATTTGGATGAGACTCTTTTGGATGAC-ATCCACCGCG 838
Query 824 AAACAAAAACATATCCAATTGGGTCTCCTCCTGATGTGGATCACAATCCGCCT-GCTTCA 882
|||||||||| ||||||| |||||||||||||||||||||||||||||||| | ||||||
Sbjct 839 AAACAAAAACTTATCCAACTGGGTCTCCTCCTGATGTGGATCACAATCCGC-TAGCTTCA 897
Query 883 GTATCAAGCAGAAATTTGGTTGACGATGATTCAAGAGATTCCTCAGTGTATGACGATGAA 942
||||||||||||||||||||||||||||| || |||||||||| ||| | ||||||||||
Sbjct 898 GTATCAAGCAGAAATTTGGTTGACGATGAATCTAGAGATTCCTTAGTATGTGACGATGAA 957
Query 943 AATAACAAAGCTGAGAGATATTCTTATGAGGAAAATGGAGCTGAAGATGTTTCTGCATCT 1002
|||||||||||||| ||| ||||||||||||||||| || ||||||||||||| | |||
Sbjct 958 AATAACAAAGCTGAAAGACATTCTTATGAGGAAAATCAAGATGAAGATGTTTCTACTTCT 1017
Query 1003 GTTGCTACCGGTTTTCAGCAACTTACTATTGACAATGAAGAAGAGCAGGAAGCATTACCG 1062
|||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1018 GTTGCTACTGGTTTTCAGCAACTAACTATTTACAATGAAGAAGAGCAGGAAGCATTACCA 1077
Query 1063 AGAG-ATGACAAACCTGCAGTGATAATTCCCAATCACCTGCAAGTCCATACCTCGGAATG 1121
| || | || |||| ||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1078 A-AGGAAGAAAAACATGCGGTGATAATCCCCAATCACCTGCAAGTCCATACCTCGGAATG 1136
Query 1122 CTCGCACCTAATGTTCGGTAGTTTTGGTTCCGGGATAGGATCTGGTCAAACC-AGTGGCT 1180
|| |||| ||||||||||| ||||| ||| |||||||||||||||||| || |||| ||
Sbjct 1137 CTTGCACTTAATGTTCGGTTGTTTTTCTTCTGGGATAGGATCTGGTCAA-CCTAGTGCCT 1195
Query 1181 TGAATGATAAATTGGATGAATCACTAGAAGCACAGGATGATTCTTCATTCAGACATCCCG 1240
|||||||||| ||||| ||| |||||| |||| |||||||||| ||||||||||||||||
Sbjct 1196 TGAATGATAACTTGGAAGAACCACTAGTAGCAGAGGATGATTCATCATTCAGACATCCCG 1255
Query 1241 ACACTAACTTTTATGGAGAGGAAGAAG-A-A-CAGCTGAGAAATGCTGCTACTAATGAAC 1297
|||||||||| |||||||| ||||||| | | |||| ||||||||||| ||| |||||||
Sbjct 1256 ACACTAACTTCTATGGAGAAGAAGAAGCAGAACAGCCGAGAAATGCTGTTACAAATGAAC 1315
Query 1298 AAGTGTCTTATCAAATCGATTCAAGT 1323
||||||||||||||||||||||||||
Sbjct 1316 AAGTGTCTTATCAAATCGATTCAAGT 1341
Score = 1094 bits (592), Expect = 0.0
Identities = 706/762 (93%), Gaps = 3/762 (0%)
Strand=Plus/Plus
Query 1650 AAA-TTCCATGGCCGAGGCACTAAGAGCTGCGAGTATTTCATCTCAAAACGCAATGCCCA 1708
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1538 AAATTTCCATGGCCGAGGCACTAAGAGCTGCGAGTATTTCACCTCAAAACGCAATACCCA 1597
Query 1709 GTGCAGGACAACAAGCAGCAGCTCTTGCACAACACCTCGCCTTAAATCCATACTCTCATC 1768
|||||||||| ||||||||| ||||||||||||| || ||||||||||| ||||||||||
Sbjct 1598 GTGCAGGACAGCAAGCAGCAACTCTTGCACAACATCTTGCCTTAAATCCCTACTCTCATC 1657
Query 1769 AGCCCGGGATGCCTTTAGGGCATTATGGTAATTTGATAAGCTACCCATTCATGGCACAGA 1828
|||| | |||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1658 AGCCTGAGATGCCTTTAGGACATTATGGCAATTTGATAAGCTACCCATTCATGGCACAGT 1717
Query 1829 GTTACAACCCTTACATGCCTTCAGCTTTTCAGCAAGCGTTTCCCACTGGGAACCATCAGT 1888
|||||||||||| ||||| |||||||||||| |||| |||||| ||||| || |||||||
Sbjct 1718 GTTACAACCCTTTCATGCTTTCAGCTTTTCAACAAGTGTTTCCTACTGGTAATCATCAGT 1777
Query 1889 CTTTAGCTGCTATGCTTCCGCAATACAAAACTCAAGCAACCGCTCCTCCTGTTCCTCCTC 1948
|||||| || ||||||| ||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1778 CTTTAGTTGATATGCTTATGCAATACAAGACTCAAACAACCGCTCCTCCTGTTCCTCCTC 1837
Query 1949 CCTCTGCCTATGGTTTTGGCGGTGGCGCTGCCTCAAGTAACAACTTCCCTTTGAATCCCA 2008
||||||||||||| || || || ||||||| ||||||||| |||||||||||||||||||
Sbjct 1838 CCTCTGCCTATGGGTTCGGTGGAGGCGCTGTCTCAAGTAATAACTTCCCTTTGAATCCCA 1897
Query 2009 CAAGTGCTGCAAACTCCTACGAAGATGTCTTGAGCTCCCAGTTTAATGATG-GCAATCAC 2067
||||||||||||||||||||||||||||||||||||| ||||||||||| | |||| |||
Sbjct 1898 CAAGTGCTGCAAACTCCTACGAAGATGTCTTGAGCTCACAGTTTAATGA-GAGCAACCAC 1956
Query 2068 TTGGCATCATCTCTTCAGCAGCAGAATGAAAACTCAGCAGCCTGGCATCAAGGACAACAA 2127
|||||||||||||||||||||||||| ||||| || |||| ||||||||||||||||||
Sbjct 1957 TTGGCATCATCTCTTCAGCAGCAGAACGAAAAAACAACAGCATGGCATCAAGGACAACAA 2016
Query 2128 CCCAACTCGCGAGTAGTTCCAGGAAGCGGATATTACAGCTTCCCTGGTCATCAGAATCAG 2187
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2017 GCCAACTCGCGAGTGGTTCCAGGAAGCGGATATTACAGCTACCCTGGTCATCAGAATCAG 2076
Query 2188 CAGCCTCCCGGTTTCCGTcaagcccaacaactgcaacagcagcagcagccgtctcaacaa 2247
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 2077 CAGCCTCCCGGTTTCCGTCAAGCCCAACAACTGCAACATCAGCAGCAGTCGTCTCAACAA 2136
Query 2248 caacagcaacaacaacaTTATGGAGGACATGGCTATGTGAGTCCTTACCATTCACAAGCT 2307
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2137 CAACAACAACAACAACATTATGGAGGACATGGGTATGTGAGTCCTTACCATTCACAAGCT 2196
Query 2308 GCAATGTCATTAGAACATCTTCATCACCAACACCAACAACAACAAAACGCTAGAGACGCG 2367
| ||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 2197 GTAATGTCACTAGAACATCTTCATCACCAATACCAACAACAGCAAAACGCTAGAGACGCG 2256
Query 2368 TCTAAACAGACCCAACAGCAGTTATGGCCCAACAACTACTGA 2409
|| |||||| ||||||| |||||||||||||||||||||||
Sbjct 2257 TCGAAACAGTCCCAACAATAGTTATGGCCCAACAACTACTGA 2298
Score = 292 bits (158), Expect = 8e-78
Identities = 184/197 (93%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 1425 TTACGGATTTGAAAACAGCCAACAGTTGAATCCTCCATCAGAAACCAATCCTCAAATGCA 1484
|||| |||||||||||| ||||| ||| |||||||||||||||| |||||||| | |||
Sbjct 1341 TTACAGATTTGAAAACAACCAACTGTTCCATCCTCCATCAGAAACAAATCCTCAGAGGCA 1400
Query 1485 GAATCTCGATACCTACCCCAACGTAATGCAGCAAGGATATACAAGTTCGTTACCCAACAC 1544
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1401 GAATCTCGATACCTACCCCAACATAATGCAGCAAGGATATACAAGTTCGTTACCCAACAC 1460
Query 1545 TCTACTCCCATCAGGCATTCAAGATGGAAGAGAATCTGATCTTCACTACTTGCCTTTCAC 1604
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1461 TCTACTCCCATCAGGCATTCAAGATGGAAGAGAATCTAATCTTCACTACTCGCCTTTCAC 1520
Query 1605 AACAAAATACAACACTG 1621
|||| |||||||||||
Sbjct 1521 AACACTATACAACACTG 1537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119627898735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5