BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg890395

Length=672
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G18070.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   909    0.0  


> AT4G18070.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G29530.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr4:10030632-10032963 FORWARD LENGTH=1368
Length=1368

 Score =  909 bits (492),  Expect = 0.0
 Identities = 599/648 (92%), Gaps = 17/648 (3%)
 Strand=Plus/Plus

Query  35   ATGAGCGCATAGAGATCACTGATTCAAGCCATGATCATGACAAGAGCTCtagtagcagca  94
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  356  ATGAACGCATAGAGATCACTGATTCAAGCCATGATCATGACAAGAGCTCTAGTAGCAGCA  415

Query  95   gtagtagtagtagc-g--gcagcagc---agcTCGGATGATGAGTCCCGGGAAGTCAAGA  148
            |||||||||| ||| |  ||||||||   ||||||||||||||||| |||||||||||||
Sbjct  416  GTAGTAGTAGCAGCAGCAGCAGCAGCTCCAGCTCGGATGATGAGTCACGGGAAGTCAAGA  475

Query  149  AGATAGATGATAACAAGGAGATTGGTGATTCTGTTTCTGAAGTTATTACTGTGAGTTCTG  208
            ||||||||||| | ||| ||| |||||||  |||||||||||||||||||||||||||||
Sbjct  476  AGATAGATGATGATAAGAAGACTGGTGATGATGTTTCTGAAGTTATTACTGTGAGTTCTG  535

Query  209  TGCCAATTCAACCTGTGCCAATTGCTGGAGATGCTCCGTTTATGGG-TTGTACTGCTAAT  267
            ||||||||||||||||||| ||||||| |||||||||||||||||| || ||||||||||
Sbjct  536  TGCCAATTCAACCTGTGCCTATTGCTGCAGATGCTCCGTTTATGGGATT-TACTGCTAAT  594

Query  268  GCGATTGTAGAGAATACCGGTTTGATGGATTCAACTGTGCCTAGTGATCCC-AACTCTGG  326
            ||||||||||||||||| ||||||||||||||| ||||||| | ||||||| || |||||
Sbjct  595  GCGATTGTAGAGAATACTGGTTTGATGGATTCAGCTGTGCCGAATGATCCCGAA-TCTGG  653

Query  327  AGAACTGGTTGAGATCTCGCATGTTGATACAATAATCTCAAACGAGGCTGATGAGAATTC  386
            |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct  654  AGAACTGGTTGAGATCTCGCATGTTGATACAATAGTCTCAAACGAGGCTGATGATAATTC  713

Query  387  TTTGCCTAAACCATCTGAGGTTGCCGCTGAAGTTGCTCTTGCATCTGATGAGATTAGGCA  446
            |||||||||| || ||||| |||| ||||||||||||||||||| |||||||||||||||
Sbjct  714  TTTGCCTAAAGCAACTGAGATTGCTGCTGAAGTTGCTCTTGCATTTGATGAGATTAGGCA  773

Query  447  GGCGTCTTCAGGTGCAACTGACTCTGATGTGAAAGAAAATGAGGGAAAAACATCACCGCC  506
            | ||||||||||||| ||||||||||||||||||||||||||||||||||| ||   |||
Sbjct  774  GACGTCTTCAGGTGCTACTGACTCTGATGTGAAAGAAAATGAGGGAAAAACTTC---GCC  830

Query  507  TCTACCAGAATCCAACGGTGTTCCTGAAGGCAACAGAGAGTCTGAA-GTTGTCATTTCTC  565
            ||| ||||||||||||||||||||||||||||||| ||||||| || |||||||||||||
Sbjct  831  TCTTCCAGAATCCAACGGTGTTCCTGAAGGCAACATAGAGTCT-AATGTTGTCATTTCTC  889

Query  566  ATGAGGAAGAGGCTCCCGTGCT-GATACCAACACATGGAATTGCGCAAAGAACCTCGTGG  624
            ||||||||||||||||| | || |||||||||||||||||||||| |||||||||| |||
Sbjct  890  ATGAGGAAGAGGCTCCCAT-CTTGATACCAACACATGGAATTGCGAAAAGAACCTCATGG  948

Query  625  TTTAGTTGCTGTGGCTTGTTTGATGTGGCCACAGGATCCAGTAGATAA  672
            ||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct  949  TTTAGTTGCTGCGGCTTGTTTGATGTGGTCACAGGATCCAGTAGATAA  996



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32501493109


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5