BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890400
Length=456
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16295.1 | Symbols: SPH1 | S-protein homologue 1 | chr4:9215... 688 0.0
AT4G29035.1 | Symbols: | Plant self-incompatibility protein S1... 577 4e-164
> AT4G16295.1 | Symbols: SPH1 | S-protein homologue 1 | chr4:9215680-9216135
REVERSE LENGTH=456
Length=456
Score = 688 bits (372), Expect = 0.0
Identities = 430/458 (94%), Gaps = 4/458 (1%)
Strand=Plus/Plus
Query 1 ATGAATTGCATCAAA-AAGTTTCTCTTGACAATTTGCTTTTCTCTAGCCCTAACATGTCA 59
||||||||||||||| || ||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1 ATGAATTGCATCAAACAA-TTTCTCTTGGCAATTTGCTTTTCTCTGGCCCTAACATGTCA 59
Query 60 AGATCATGTCTTAGCCGGCGGCACCACCACGAGAGACATCATAGTCCCAAAGATTTCCGA 119
||| |||||||||| |||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 60 AGACCATGTCTTAGTCGGCGGCACCACCACGAGAGACATTATAGTCCCGAAGATTTCTGA 119
Query 120 GTGGCAAGTCACGGTTCTTAACGGTTTGACCACTGGTGAAACTCTTTTCATCCATTGTAA 179
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 GTGGCAAGTCACGGTTGTTAACGGTTTGACAACTGGTGAAACTCTTTTCATCCATTGTAA 179
Query 180 ATCTAAGGAAGATGATCTAGGTGAAATTAGTTTGAAGTTTAGAGATAGAtttttttGGAA 239
|||||| |||||||||||||||||||||| | ||||||||||| ||||||||| ||||||
Sbjct 180 ATCTAAAGAAGATGATCTAGGTGAAATTAATCTGAAGTTTAGAAATAGATTTTCTTGGAA 239
Query 240 CTTCGGAGAAAATATGCTTCACTCAACTTTGTTTTGGTGCTATATGCACAAAGATGATGG 299
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||
Sbjct 240 CTTCGGAGAAAATATGCTTCACTCAACTTTTTTTTGGTGCTATATGAACAAAGATAATGG 299
Query 300 TCATATGAATGTAAACGTGTTTTGGGATGATGTTATTTTGTTTCATAGATGCGGTTGGAA 359
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 300 TCATATGAATGTAAACGTGTTTTGGGATGATGTTATCTTGTTCCATAGATGCGGTTGGAA 359
Query 360 GAATTGTATTTGGACCGCAAAAACTGATGGTCTTTATCTTTGGAATTCAGCGAGCGGTCA 419
|||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 360 GAATTGCATTTGGACTGCAAAAACTGATGGCCTTTATCTTTGGAATTCAGCGAGCGGTGA 419
Query 420 AGATGTATTGTCAGAGAAA-TGGAAAGTTGGATGGTGA 456
||||||||||||| ||||| ||| ||||||||||||||
Sbjct 420 AGATGTATTGTCA-AGAAAATGGGAAGTTGGATGGTGA 456
> AT4G29035.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr4:14310315-14310770 FORWARD LENGTH=456
Length=456
Score = 577 bits (312), Expect = 4e-164
Identities = 414/462 (90%), Gaps = 12/462 (3%)
Strand=Plus/Plus
Query 1 ATGAATTGCATCAAA-AAGTTTCTCTTGACAATTTGCTTTTCTCTAGCCCTAACATGTCA 59
||||||| ||||||| || ||| ||||| |||||||||||| ||||| | ||||||||||
Sbjct 1 ATGAATTACATCAAACAA-TTTATCTTGGCAATTTGCTTTTATCTAGTCTTAACATGTCA 59
Query 60 AGATCATGTCTTAGCCGGCGGCACCACCACGAGAGACATCATAGTCCCAAAGATTTCCGA 119
||||||||| |||||| ||| ||||||||||||||||||| ||||||| |||||||||||
Sbjct 60 AGATCATGTTTTAGCCCGCGACACCACCACGAGAGACATCGTAGTCCCGAAGATTTCCGA 119
Query 120 GTGGCAAGTCACGGTT-CTTAACGGTTTGACCACTGGTGAAACTCTTTTCATCCATTGTA 178
||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GTGGCAAGTTACGGTTGC-TAACGGTTTGACCACTGGTGAAACTCTTTTCATCCATTGTA 178
Query 179 AATCTAAGGAAGATGATCTAGGTGAAATTAGTTTGAAGTT-TAGAGATAGAtttttttGG 237
| ||||||||| | ||||||||||| |||| ||||||| | ||||||||||| ||||
Sbjct 179 AGTCTAAGGAAAACGATCTAGGTGATATTAACCTGAAGTTCTT-AGATAGATTTTCTTGG 237
Query 238 AACTTCGGAGAAAATATGCTTCACTCAACTTTGTTTTGGTGCTATATGCA-CAAAGATGA 296
|| || |||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 238 AATTTTGGAGAAAATATGCTTCACTCAACTTTGTTTTGGTGCTATATG-AGCAAAGATGA 296
Query 297 TGGTCATATGAATGTAAACGTGTTTTGGGATGATGTTATTTTGTTTCATAGATGCGGTTG 356
|||||||||||||||||| ||||||||||||||||||||| | ||||||||||| | |||
Sbjct 297 TGGTCATATGAATGTAAAAGTGTTTTGGGATGATGTTATTCTATTTCATAGATGTGATTG 356
Query 357 GAAGAATTGTATTTGGACCGCAAA-AACTGATGGTCTTTATCTTTGGAATTCAGCGAGCG 415
|||||||||| ||||||||||||| || |||||| ||||||||||||||||| || | ||
Sbjct 357 GAAGAATTGTGTTTGGACCGCAAAGAA-TGATGGCCTTTATCTTTGGAATTCTGCAATCG 415
Query 416 GTCAAGATGTATTGTCAGAGAAATGGAAAGT-TGGATGGTGA 456
|| |||||||| |||| |||||||||||| | ||||||||||
Sbjct 416 GTGAAGATGTACTGTCGGAGAAATGGAAA-TCTGGATGGTGA 456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21715667568
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5