BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890409
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17980.1 | Symbols: anac071, NAC071 | NAC domain containing ... 1166 0.0
> AT4G17980.1 | Symbols: anac071, NAC071 | NAC domain containing
protein 71 | chr4:9978850-9980038 REVERSE LENGTH=789
Length=789
Score = 1166 bits (631), Expect = 0.0
Identities = 720/763 (94%), Gaps = 5/763 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAGTTCATGTTTGCCTCCAGGATTTAGATTTCATCCAACTGATGAAGAGCTCATA 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGAGTTCATGTTTGCCTCCAGGATTTAGATTTCATCCAACTGATGAAGAGCTCATA 60
Query 61 GGCTACTACTTGAGTAGAAAAGTAGAAGGTCTTGAGATTGAGCTTGAAGTCATTCCTGTT 120
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 61 GGCTACTACTTGAGTAGAAAAATAGAAGGTCTCGAGATTGAGCTTGAAGTCATTCCTGTT 120
Query 121 ATCGACTTATACAAATTTGATCCTTGTGAGTTGCCAGATAAATCTTTCCTTCCGAACAGA 180
|||||||||||||||||||||||||| |||||||||| ||||||||||||||| || |||
Sbjct 121 ATCGACTTATACAAATTTGATCCTTGGGAGTTGCCAGGTAAATCTTTCCTTCCAAATAGA 180
Query 181 GATTTGGAATGGTTCtttttttGTCCAAGAGACAAAAAGTATGCAAACGGTTCTCGAACC 240
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 181 GATTTGGAATGGTTCTTTTTCTGTCCAAGAGACAAAAAATATGCAAACGGTTCTCGAACC 240
Query 241 AATAGGGCTACAAAAGCAGGTTATTGGAAAGCAACCGGTAAAGACCGGAAAATCACTTGT 300
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 AATAGGGCTACAAAAGCGGGTTATTGGAAAGCAACTGGTAAAGACCGGAAAATCACTTGT 300
Query 301 AAATCGTCGCATGTTATAACTGGATACCGGAAAACCTTAGTTTTCTATGAAGGCCGTGCC 360
||||| |||||||||||| |||||||||| ||||||||||||||||||||||| ||||||
Sbjct 301 AAATCATCGCATGTTATAGCTGGATACCGAAAAACCTTAGTTTTCTATGAAGGTCGTGCC 360
Query 361 CCATTAGGCGACAGGACTAATTGGTTTATGCATGAATATCGTCTATGCGAT---GATGAT 417
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 CCATTAGGCGACAGAACTAATTGGTTTATGCATGAATATCGTCTATGCGATATTGATGAT 420
Query 418 CATTCACAAAAATCACCAAATGTCAAGGGAGCTTTCGTGTTATGTCGCGTAGTTAAGAAG 477
||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||
Sbjct 421 CATTCACAAAAATCACCAAATTTCAAGGGAGCTTTTGCGTTATGTCGCGTAGTTAAGAAG 480
Query 478 AATGAACTGAAGACCAATTTGAAAAGTTTGAAAAATAAAAACGAACAAGACATTGGTTCT 537
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AATGAACTGAAGAAAAATTCGAAAAGTTTGAAAAATAAAAACGAACAAGACATTGGTTCT 540
Query 538 GGTTACTCTAGCCTCACGAACTCTCCTTGTCGCGACGAAACGTCGCAGTTTCAATCGTTC 597
|||||||||||||| ||| ||||||||||||||| ||| |||||||| |||||||||||
Sbjct 541 TGTTACTCTAGCCTCGCGACCTCTCCTTGTCGCGATGAAGCGTCGCAGATTCAATCGTTC 600
Query 598 AAGCCTTCTTCTACTGA-AAACGACTCCTCTAGCATTTGGATTTCTCCTGATTTCATCCT 656
||||||||||||||| | ||||||||| || |||||||||||||||||||||||||||||
Sbjct 601 AAGCCTTCTTCTACT-ACAAACGACTCTTCAAGCATTTGGATTTCTCCTGATTTCATCCT 659
Query 657 TGATTCTTCAAAGGATTATCCTCAGATTCAGGAGGTTGCTTCCGAATATTTTCCCAACTA 716
|||||| ||||||||||||||||||||| ||||||||||||| || | |||||||||||
Sbjct 660 TGATTCGTCAAAGGATTATCCTCAGATTAAGGAGGTTGCTTCTGAGTGCTTTCCCAACTA 719
Query 717 CAATTTTCCGGTCACCACGGCAAACCACCATGTGGAATTTCCG 759
| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 720 CCATTTTCCGGTCACCACGGCAAACCACCACGTGGAATTTCCG 762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38228185867
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5