BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890445
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17680.1 | Symbols: | SBP (S-ribonuclease binding protein) ... 1218 0.0
> AT4G17680.1 | Symbols: | SBP (S-ribonuclease binding protein)
family protein | chr4:9842872-9844095 REVERSE LENGTH=976
Length=976
Score = 1218 bits (659), Expect = 0.0
Identities = 846/933 (91%), Gaps = 25/933 (3%)
Strand=Plus/Plus
Query 13 TCTATCTCTGATAGTTTAATGGCGGTTCAAGCTCAGCATCCTTCAAGTTTCTTCTTCATC 72
||| |||||||||| | ||||||| |||||||||||||||||||| |||||||||||| |
Sbjct 35 TCT-TCTCTGATAGCTCAATGGCGATTCAAGCTCAGCATCCTTCACGTTTCTTCTTCAAC 93
Query 73 AACAGTAACGGACAAGAAGCGAATGATTGTTCGTTACAGCCTCAAGACACTCATTTCACT 132
|||||||||||||||||||| | |||||||||||| |||||||||||||||| |||||||
Sbjct 94 AACAGTAACGGACAAGAAGCTAGTGATTGTTCGTTGCAGCCTCAAGACACTCCTTTCACT 153
Query 133 AATTTCATCAACGCTGGGGTTGATTCAAGAAAACGATCAAGAGAAGTTTATTCATCGGTG 192
||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 154 AATTTCACCAAAGCTGGGGTTGATTCAAGAAAACGATCAAGAGAAGTTTATTCA----T- 208
Query 193 ACGACGACGGCTCCGATGAACCCTCCACCTCCAAAACCGTCGCAAGTTATTGACT-TAAA 251
|||||| ||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 209 -------CGGCTCTGATGAACCCTCCACCTCCAAAACCGTCGCAAGTTATTGA-TATAAC 260
Query 252 CGAGTTGATGCAGAAAACGCCTAATGTGGTTTCTACTGGTCTTCGATTATCTCATGACCA 311
||||||| |||||||||||||||| |||||||| |||||||||||||||| |||||| ||
Sbjct 261 CGAGTTGTTGCAGAAAACGCCTAACGTGGTTTCCACTGGTCTTCGATTATTTCATGATCA 320
Query 312 GTCACAGAATCAACAACACTTTTATTCTTCTCTTCCCGGAGATGTTACCGGAAATATTAA 371
|||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||
Sbjct 321 GTCACAGAATCAACAACAGTTTTTTTCTTCTCTTCCCGGAGATGTTACCGGAAAGATTAA 380
Query 372 ACGGCAAAGAGATGAATTAGACAGATTCATTCAAACTCAGGGTGAGGAACTGCGGCGTAC 431
|||||||||||||||| |||||||||||||||| ||||||||||| || ||||||||||
Sbjct 381 ACGGCAAAGAGATGAACTAGACAGATTCATTCAGACTCAGGGTGAAGAGTTGCGGCGTAC 440
Query 432 GTTAGCGGATAACAGAGAGAGGCGCTACGTAGAGCTATTGTGCGCTGCGGAGGAGATAGT 491
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 441 GTTAGCGGATAACAGAGAGAGACGCTACGTAGAGTTATTGTGCGCTGCGGAGGAGATAGT 500
Query 492 CGGACGGAAAGTCAGAGAAAAAGAAGCGGAGCTGGAGAAAGCAACGCGCCGTCACGCTGA 551
|||||||||| | ||| |||||||||||||| |||||||||| |||||||||||||||||
Sbjct 501 CGGACGGAAATTGAGAAAAAAAGAAGCGGAGTTGGAGAAAGCCACGCGCCGTCACGCTGA 560
Query 552 GCTAGAGGCGCGTGTAGCTCACCTCGCGGAAGAGGCGCGAAACTGGCAGTTAAGAGCGGC 611
|||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 561 GCTAGAAGCGCGTGTAGCTCACATCGTGGAAGAGGCGCGAAACTGGCAGTTAAGAGCGGC 620
Query 612 GACGCGGGAAACCGAGGTTTCCTCGTTACAGGCTCATCTCCAACAAGCAATAGC-AAGCC 670
|||||||||| | ||||| ||||||||||| ||||||||||||||||| ||||| || ||
Sbjct 621 GACGCGGGAAGCTGAGGTGTCCTCGTTACATGCTCATCTCCAACAAGCCATAGCTAA-CC 679
Query 671 GCCGAGATACGGCGGCGAAACAGAGCACGTTCGGAGACGACGACGGCGACGCGGAGGAAG 730
||| ||||||||||||||||||||| ||||||||||| |||| ||| |||||||| ||||
Sbjct 680 GCCTAGATACGGCGGCGAAACAGAGTACGTTCGGAGAAGACGGCGGAGACGCGGAAGAAG 739
Query 731 CAGAGGACGCCGAATCGGTTTACGTGGATCCGGAGCGGATCGAATTGATCGGTCCTAGTT 790
|||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 740 CAGAGGACGCTGAATCGGTTTACGTGGATCCGGAGCGGATCGAATTGATCGGACCAAGTT 799
Query 791 GTAGGATTTGCCGGCA-AAATTTGGCGACGGTGATGGCATTGCCGTGTCGACATCTGGCT 849
||||||||||||||| |||| || |||||||||||||||||||||||| |||| || |
Sbjct 800 GTAGGATTTGCCGGCGGAAATCTG-CGACGGTGATGGCATTGCCGTGTCAACATTTGATT 858
Query 850 CTATGTGAA-GGATGCGACGGCGGAGCAGTGCGAG-CTTGTCCGATTTGCCTCGCCGTGA 907
|| ||| || |||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 859 CTTTGT-AATGGATGCGACGTCGGAGCAGTGCGAGTCT-GTCCGATTTGCCTCGCCGTGA 916
Query 908 CAAA-TTGCGGTGTCGAAGTTTTATATTCATGA 939
| | || ||||||||||||||||| || ||||
Sbjct 917 -AGACTTCCGGTGTCGAAGTTTTATTTTGATGA 948
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45914010358
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5