BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890447
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17660.1 | Symbols: | Protein kinase superfamily protein | ... 1648 0.0
AT5G47070.1 | Symbols: | Protein kinase superfamily protein | ... 459 4e-128
> AT4G17660.1 | Symbols: | Protein kinase superfamily protein
| chr4:9831359-9833006 FORWARD LENGTH=1209
Length=1209
Score = 1648 bits (892), Expect = 0.0
Identities = 1070/1156 (93%), Gaps = 12/1156 (1%)
Strand=Plus/Plus
Query 1 ATGAATTGTATGTTCGTGTTCAAGTCCAAGAAACCAAAATCCAGAAGAAATCTGAAGAAA 60
||||||||| ||||| |||||| |||||||||||||||||||||| ||||| || |||||
Sbjct 43 ATGAATTGTCTGTTCTTGTTCATGTCCAAGAAACCAAAATCCAGAGGAAATATGGAGAAA 102
Query 61 GATAACAAAAACATAAGAGGAAGAGAGTTTTTACAAAAGTCTGCTCCAGAATTAACGACA 120
|| || ||||||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct 103 GAGAAAAAAAACATAAGAGGAAGAGAGTTCTTGCAAAAGTCAGCTCCAGAATTAACGACG 162
Query 121 AG-AAGAACATCTTTGTCGTTCAATCTCCCAACACCAAGATCTCTGCCATCTCCAACGAG 179
|| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 AGAAAG-ACAACTTTGTCGTTCAATCTCCCAACACCAAGATCTCTGCCATCTCCAACGAG 221
Query 180 TATCAAAGACTTGTACACTGAGAGAGAGCAAAATCAAAATCAAAACCTAATGGTTTTCTC 239
|||||||||||||||||| || ||||| |||||||||||||||||||| | |||||| ||
Sbjct 222 TATCAAAGACTTGTACACAGACAGAGAACAAAATCAAAATCAAAACCTGAGGGTTTTTTC 281
Query 240 TTACAAGGAACTGAGTGACGCCACGTGTGAGTTTAGCAGAAAGCTGAAGATCGGAGAAGG 299
|| ||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 282 TTTCAAGGAACTGAGTGACGCCACTTGTGAGTTTAGCAGGAAGCTAAAGATCGGAGAAGG 341
Query 300 TGGTTTTGGTAGTGTCTATAAAGCCACCATTGACAATCCCACCGGAGGAGATTCTCATTC 359
||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 342 TGGCTTTGGTAGTGTCTATAAAGCCACCATTAACAATCCCACCGTAGGAGATTCTCATTC 401
Query 360 TTCTCCACTTACCGTCGCCATTAAGAAACTTAATCGACAAAGTCTACAGGGTCACAAGCA 419
||||||||||||||| ||| |||||||||| ||| |||||||||||||||||||||||||
Sbjct 402 TTCTCCACTTACCGTAGCCGTTAAGAAACTCAATAGACAAAGTCTACAGGGTCACAAGCA 461
Query 420 ATGGCTAGCAGAGGTTCA-TTTGTTGGGCGTGGTGAATCACCCTAACGTAGTGAGGCTCT 478
|||||||||||||||||| ||| ||||| |||||||||||||||||||| ||||||||||
Sbjct 462 ATGGCTAGCAGAGGTTCACTTT-TTGGGAGTGGTGAATCACCCTAACGTTGTGAGGCTCT 520
Query 479 TAGGGTATTGTTCAGAGGACAGAGAGAGACTTTTGGTTTACGAGTTGATGTCTAATCGTA 538
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 521 TAGGGTATTGCTCAGAGGACAGAGAGAGACTTTTGGTTTACGAGTTGATGTCTAATCGCA 580
Query 539 GTTTGGAGGATCATCTCTTCACTCGAAAAACCTTAACGTTGTCATGGAAACAAAGGCTTG 598
| |||||||||||||||||||||| || ||||||||||||||| |||||||||||||| |
Sbjct 581 GCTTGGAGGATCATCTCTTCACTCTAAGAACCTTAACGTTGTCGTGGAAACAAAGGCTCG 640
Query 599 AGATCATGCTTGGTGCAGCTCAAGGATTGGCTTATTTGCACGAAATCCAGGTAATATACA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 AGATCATGCTTGGTGCAGCTCAAGGATTGGCTTATTTGCACGAAATCCAGGTAATATACA 700
Query 659 GAGACTTTAAATCATCAAATGTGCTTTTAGACGAAGAATTTCATCCGAAATTATCGGATT 718
||||||| ||||||||||||||||| ||| | |||||||| |||||||||||||| ||||
Sbjct 701 GAGACTTCAAATCATCAAATGTGCTATTAAATGAAGAATTCCATCCGAAATTATCCGATT 760
Query 719 TTGGTCTCGCTAGAGAAGGTCCGGAAGGAGACAATACTCACGTTACAACCGCAAGAATTG 778
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 761 TTGGTCTCGCTAGAGAAGGTCCCGAAGGAGACAATACTCACGTTACAACCGCAAGAGTTG 820
Query 779 GAACGGACGGCTATGCAGCACCAGAGTATGTAATAACCGGCCATCTCAAAACACATTGCG 838
|||| ||||||||||| || || ||||||||||||||||| || ||||| ||||||||||
Sbjct 821 GAACAGACGGCTATGCCGCTCCCGAGTATGTAATAACCGGTCACCTCAAGACACATTGCG 880
Query 839 ATGTCTATAGCTTTGGAGTTGTTTTGTACGAGATCATCACTGGTCGTCGCACATTGGAAC 898
|||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 881 ATGTATATAGCTTTGGAGTTGTTTTGTACGAAATTATCACTGGTCGTCGCACATTGGAAC 940
Query 899 GAATGAAACCTTTGGCTGAACAAAAGCTTCTAGAATGGGTCCAAGAATATCCTGTCGATA 958
||||||||||||| ||||||||||||||||||||||||||| || |||||||| | |||
Sbjct 941 GAATGAAACCTTTAGCTGAACAAAAGCTTCTAGAATGGGTCAAAAAATATCCTATTAATA 1000
Query 959 GCAAAAGATTCAAAAAGATCATTGAC-CCGAAGCTATGCAATAAATATC-ATCTTCCTAT 1016
||||||||||||||| |||| ||||| || |||||||||||||| |||| | || ||||
Sbjct 1001 GCAAAAGATTCAAAATGATCGTTGACTCC-AAGCTATGCAATAAGTATCCAA-TTGCTAT 1058
Query 1017 GGTCAGGAGAGTGGCTAAATTGGCTGATCATTGTGTGAACAAGATCGATAAA-AAGAGAC 1075
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1059 GGTCAGGAGAGTGGCTAAATTGGCTGATCATTGTGTGAACAAGATCGATAAAGAA-AGAC 1117
Query 1076 CCACCATGGCCTTCGTCGTCGAAAGTCTTACGAAGATTATTGAGGAAGT-AACTTCTGAA 1134
| ||||||||||| |||||||||||||||||||| || ||||||||| | || |||||||
Sbjct 1118 CTACCATGGCCTTTGTCGTCGAAAGTCTTACGAATATCATTGAGGAA-TCAAATTCTGAA 1176
Query 1135 GATATGGGAACTTCTG 1150
|||||||||| |||||
Sbjct 1177 GATATGGGAAGTTCTG 1192
> AT5G47070.1 | Symbols: | Protein kinase superfamily protein
| chr5:19118543-19120909 REVERSE LENGTH=1754
Length=1754
Score = 459 bits (248), Expect = 4e-128
Identities = 852/1129 (75%), Gaps = 99/1129 (9%)
Strand=Plus/Plus
Query 1 ATGAATTGTATGTTCGTGTTCAAGTCCAAGAAA-CCA-AAATCCAGA-AGAAATCTGAAG 57
||||| ||| ||||| ||||||| || |||||| ||| ||| || | ||||| ||
Sbjct 382 ATGAACTGTCTGTTCTTGTTCAAATCAAAGAAACCCAGAAA-GCA-ACAGAAA-GACAAC 438
Query 58 AA-AGATAACAAAAACATAAGAGG-AAGAGAGTTTTTACAAAAGTCTGCTCCAGAATTAA 115
|| | | ||| |||| | || ||| || |||||| |||||||| || ||||||||| | |
Sbjct 439 AACA-AGAAC-AAAAGA-AA-AGGTAA-AGAGTTGTTACAAAACTCAGCTCCAGAACTGA 493
Query 116 CG-A-CAAGA-AG-AACATCTTTGTCGTTCAATCTCCCA-ACACCAAGATC-TCTGCCAT 169
|| | | || | ||| || | ||||| ||||| ||| ||||||||||| | |||| |
Sbjct 494 CGAATC-GGAGTGAAACGTC--T-TCGTTTAATCT-CCAGACACCAAGATCGT-TGCCTT 547
Query 170 CTCCAACG-AGTATCAAAGACTTGTACACTGAGAGAGAGCAAAATCAAAATCAAAACCTA 228
|||||| | ||||||||||| ||||| || |||||||| || |||||| ||
Sbjct 548 CTCCAA-GAAGTATCAAAGATTTGTATAC--AGAGAGAG---AA-CAAAAT------CTT 594
Query 229 ATGGTTTTCTCTTAC-AAGGAACTGAGTGACGCCACGTGTGAGTTTAGCAGAAAGC-TGA 286
| |||||| |||||| || ||||| ||| | ||||| | || |||||||||||||| ||
Sbjct 595 AGGGTTTTTTCTTACGAA-GAACTCAGTAAAGCCACTTATGTGTTTAGCAGAAAGCTTG- 652
Query 287 AGATCGGAGAAGGTGGTTTTGGTAGTGTCTATAAAGCCACCATTGACAATCCCACCGGA- 345
|||||| |||||||| ||||||| ||| ||||||| | | | | || || | |
Sbjct 653 TGATCGGTGAAGGTGGATTTGGTATTGTTTATAAAG-GA--A---AGATTCTCAGC-AAT 705
Query 346 GGAGATTC-TCATTCTTCTCCACTTACCGTCGCCATTAAGAAACTTAATCGACAAAGTCT 404
|||||||| || | | |||||||| ||| ||||| |||||||| ||||||||| || |
Sbjct 706 GGAGATTCTTC-TGATCCTCCACTTGTCGTTGCCATCAAGAAACTCAATCGACAAGGTTT 764
Query 405 ACAGGGTCACAAGCAATGGCTAGCAGAGGTTCA-TTTGTTGGGCGTGGTGAATCACCCTA 463
||||||||||||||||||||||||||||||||| ||| |||| || |||||||| || |
Sbjct 765 ACAGGGTCACAAGCAATGGCTAGCAGAGGTTCAGTTTCTTGGA-GTAGTGAATCATCCGA 823
Query 464 ACGTAGTGAGGCTCTTAGGGTATTGTTCAGAGGAC----AGA--G--A--GAGA--CTTT 511
|||| |||| |||| |||| ||||| || || ||| ||| | | |||| ||||
Sbjct 824 ACGTTGTGAAGCTCATAGGTTATTGCTCGGAAGACGGCGAGACCGGGATCGAGAGGCTTT 883
Query 512 TGGTTTACGAGTTGATGTCTAATCGTAGTTTGGAGGATCATCTCTTCACTCGAAAAAC-C 570
||||||| |||| ||||| ||||| ||||| || || ||||||||| |||| | | |
Sbjct 884 TGGTTTATGAGTACATGTCGAATCGAAGTTTAGAAGACCATCTCTTCCCTCGTCGATCAC 943
Query 571 TTAACGTTGTCATGGAAACAAAGGCTTGAGATCATGCTTGGTGCAGCTCAAGGATTGGCT 630
| | || | |||||| |||| || ||||||||||||||||| ||| |||||||| ||
Sbjct 944 ACA-CATTACCGTGGAAAAAAAGACTCGAGATCATGCTTGGTGCTGCTGAAGGATTGACT 1002
Query 631 TATTTGCACGAAATCCAGGTAATATACAGAGACTTT-AAATCATCAAATGTGCTTTTAGA 689
||||| || || | |||| ||||| ||||| ||| ||||| || ||||||||||||||
Sbjct 1003 TATTTACATGATCTTAAGGTGATATATAGAGA-TTTCAAATCCTCTAATGTGCTTTTAGA 1061
Query 690 CGAAGAATT-TCATCCGAAATTATCGGATTTTGGTCTCGCTAGAGAAGGTCCGGAAGGAG 748
||| |||| | ||| ||||||||||| ||||| || || |||||||| || || || |
Sbjct 1062 CGATCAATTCTG-TCCAAAATTATCGGACTTTGGGCTTGCCAGAGAAGGACCTGATGGCG 1120
Query 749 ACAATACTCACGTTACAACCGCAAGAATTGGAACGGACGGCTATGCAGCACCAGAGTATG 808
|||||||||| || || ||||||||| ||||||| |||||||||| || || || || |
Sbjct 1121 ACAATACTCATGTCACTACCGCAAGAGTTGGAACACACGGCTATGCGGCTCCGGAATACG 1180
Query 809 TA-ATAACCGGCCATCT-CAA--AACACATTGCGATGTCTATAGCTTTGGAGTTGTTTTG 864
| | ||| || ||||| | || | | |||| ||||||||||| || ||||| |
Sbjct 1181 TGCA-AACAGGTCATCTTCGGTTAA-AGA--GCGACGTCTATAGCTTCGGTGTTGTGCTC 1236
Query 865 TACGAGATCATCACTGGTCGTC-GCAC-ATTG-GAACGAATGAAACCTTTGGCTGAACAA 921
||||||||||| || || || | | || |||| || ||| || || ||||||||| |
Sbjct 1237 TACGAGATCATAACCGGACG-CAGAACCATTGAGAG-GAAC-AAGCCAGTGGCTGAACGA 1293
Query 922 AAGCT-TCTAGAATGGGTCCAAGAATATCCTG-TCGATAG-CAAAAGATTCAAAAAGATC 978
| ||| | | || |||||| |||| ||||||| | ||||| ||| | |||| | ||||
Sbjct 1294 AGGCTAT-TGGATTGGGTCAAAGAGTATCCTGCT-GATAGTCAAC-GTTTCAGCATGATC 1350
Query 979 ATTGACCCGAAGCTATGCAATAAATATC-ATCTTCCTATG-G-TCAGGAGAGTGGCTAAA 1035
||||||| | || |||| || |||| | || | | | | | ||||| ||||||||
Sbjct 1351 GTTGACCCTCGGTTACGCAACAATTATCCAGCTGC-TG-GAGCT-AGGAGTTTGGCTAAA 1407
Query 1036 TTGGCTGATCATTGTGTGAACAAGATCGATAAAAAGAGACCCACCATGG 1084
|||||||||| ||| |||| |||| ||||||| || |||| || ||||
Sbjct 1408 TTGGCTGATCTTTGCCTGAAAAAGAACGATAAAGAGCGACCTACGATGG 1456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57730626750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5