BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg890447 Length=1176 Score E Sequences producing significant alignments: (Bits) Value AT4G17660.1 | Symbols: | Protein kinase superfamily protein | ... 1648 0.0 AT5G47070.1 | Symbols: | Protein kinase superfamily protein | ... 459 4e-128 > AT4G17660.1 | Symbols: | Protein kinase superfamily protein | chr4:9831359-9833006 FORWARD LENGTH=1209 Length=1209 Score = 1648 bits (892), Expect = 0.0 Identities = 1070/1156 (93%), Gaps = 12/1156 (1%) Strand=Plus/Plus Query 1 ATGAATTGTATGTTCGTGTTCAAGTCCAAGAAACCAAAATCCAGAAGAAATCTGAAGAAA 60 ||||||||| ||||| |||||| |||||||||||||||||||||| ||||| || ||||| Sbjct 43 ATGAATTGTCTGTTCTTGTTCATGTCCAAGAAACCAAAATCCAGAGGAAATATGGAGAAA 102 Query 61 GATAACAAAAACATAAGAGGAAGAGAGTTTTTACAAAAGTCTGCTCCAGAATTAACGACA 120 || || ||||||||||||||||||||||| || |||||||| ||||||||||||||||| Sbjct 103 GAGAAAAAAAACATAAGAGGAAGAGAGTTCTTGCAAAAGTCAGCTCCAGAATTAACGACG 162 Query 121 AG-AAGAACATCTTTGTCGTTCAATCTCCCAACACCAAGATCTCTGCCATCTCCAACGAG 179 || ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 163 AGAAAG-ACAACTTTGTCGTTCAATCTCCCAACACCAAGATCTCTGCCATCTCCAACGAG 221 Query 180 TATCAAAGACTTGTACACTGAGAGAGAGCAAAATCAAAATCAAAACCTAATGGTTTTCTC 239 |||||||||||||||||| || ||||| |||||||||||||||||||| | |||||| || Sbjct 222 TATCAAAGACTTGTACACAGACAGAGAACAAAATCAAAATCAAAACCTGAGGGTTTTTTC 281 Query 240 TTACAAGGAACTGAGTGACGCCACGTGTGAGTTTAGCAGAAAGCTGAAGATCGGAGAAGG 299 || ||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| Sbjct 282 TTTCAAGGAACTGAGTGACGCCACTTGTGAGTTTAGCAGGAAGCTAAAGATCGGAGAAGG 341 Query 300 TGGTTTTGGTAGTGTCTATAAAGCCACCATTGACAATCCCACCGGAGGAGATTCTCATTC 359 ||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct 342 TGGCTTTGGTAGTGTCTATAAAGCCACCATTAACAATCCCACCGTAGGAGATTCTCATTC 401 Query 360 TTCTCCACTTACCGTCGCCATTAAGAAACTTAATCGACAAAGTCTACAGGGTCACAAGCA 419 ||||||||||||||| ||| |||||||||| ||| ||||||||||||||||||||||||| Sbjct 402 TTCTCCACTTACCGTAGCCGTTAAGAAACTCAATAGACAAAGTCTACAGGGTCACAAGCA 461 Query 420 ATGGCTAGCAGAGGTTCA-TTTGTTGGGCGTGGTGAATCACCCTAACGTAGTGAGGCTCT 478 |||||||||||||||||| ||| ||||| |||||||||||||||||||| |||||||||| Sbjct 462 ATGGCTAGCAGAGGTTCACTTT-TTGGGAGTGGTGAATCACCCTAACGTTGTGAGGCTCT 520 Query 479 TAGGGTATTGTTCAGAGGACAGAGAGAGACTTTTGGTTTACGAGTTGATGTCTAATCGTA 538 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 521 TAGGGTATTGCTCAGAGGACAGAGAGAGACTTTTGGTTTACGAGTTGATGTCTAATCGCA 580 Query 539 GTTTGGAGGATCATCTCTTCACTCGAAAAACCTTAACGTTGTCATGGAAACAAAGGCTTG 598 | |||||||||||||||||||||| || ||||||||||||||| |||||||||||||| | Sbjct 581 GCTTGGAGGATCATCTCTTCACTCTAAGAACCTTAACGTTGTCGTGGAAACAAAGGCTCG 640 Query 599 AGATCATGCTTGGTGCAGCTCAAGGATTGGCTTATTTGCACGAAATCCAGGTAATATACA 658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 641 AGATCATGCTTGGTGCAGCTCAAGGATTGGCTTATTTGCACGAAATCCAGGTAATATACA 700 Query 659 GAGACTTTAAATCATCAAATGTGCTTTTAGACGAAGAATTTCATCCGAAATTATCGGATT 718 ||||||| ||||||||||||||||| ||| | |||||||| |||||||||||||| |||| Sbjct 701 GAGACTTCAAATCATCAAATGTGCTATTAAATGAAGAATTCCATCCGAAATTATCCGATT 760 Query 719 TTGGTCTCGCTAGAGAAGGTCCGGAAGGAGACAATACTCACGTTACAACCGCAAGAATTG 778 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct 761 TTGGTCTCGCTAGAGAAGGTCCCGAAGGAGACAATACTCACGTTACAACCGCAAGAGTTG 820 Query 779 GAACGGACGGCTATGCAGCACCAGAGTATGTAATAACCGGCCATCTCAAAACACATTGCG 838 |||| ||||||||||| || || ||||||||||||||||| || ||||| |||||||||| Sbjct 821 GAACAGACGGCTATGCCGCTCCCGAGTATGTAATAACCGGTCACCTCAAGACACATTGCG 880 Query 839 ATGTCTATAGCTTTGGAGTTGTTTTGTACGAGATCATCACTGGTCGTCGCACATTGGAAC 898 |||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 881 ATGTATATAGCTTTGGAGTTGTTTTGTACGAAATTATCACTGGTCGTCGCACATTGGAAC 940 Query 899 GAATGAAACCTTTGGCTGAACAAAAGCTTCTAGAATGGGTCCAAGAATATCCTGTCGATA 958 ||||||||||||| ||||||||||||||||||||||||||| || |||||||| | ||| Sbjct 941 GAATGAAACCTTTAGCTGAACAAAAGCTTCTAGAATGGGTCAAAAAATATCCTATTAATA 1000 Query 959 GCAAAAGATTCAAAAAGATCATTGAC-CCGAAGCTATGCAATAAATATC-ATCTTCCTAT 1016 ||||||||||||||| |||| ||||| || |||||||||||||| |||| | || |||| Sbjct 1001 GCAAAAGATTCAAAATGATCGTTGACTCC-AAGCTATGCAATAAGTATCCAA-TTGCTAT 1058 Query 1017 GGTCAGGAGAGTGGCTAAATTGGCTGATCATTGTGTGAACAAGATCGATAAA-AAGAGAC 1075 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 1059 GGTCAGGAGAGTGGCTAAATTGGCTGATCATTGTGTGAACAAGATCGATAAAGAA-AGAC 1117 Query 1076 CCACCATGGCCTTCGTCGTCGAAAGTCTTACGAAGATTATTGAGGAAGT-AACTTCTGAA 1134 | ||||||||||| |||||||||||||||||||| || ||||||||| | || ||||||| Sbjct 1118 CTACCATGGCCTTTGTCGTCGAAAGTCTTACGAATATCATTGAGGAA-TCAAATTCTGAA 1176 Query 1135 GATATGGGAACTTCTG 1150 |||||||||| ||||| Sbjct 1177 GATATGGGAAGTTCTG 1192 > AT5G47070.1 | Symbols: | Protein kinase superfamily protein | chr5:19118543-19120909 REVERSE LENGTH=1754 Length=1754 Score = 459 bits (248), Expect = 4e-128 Identities = 852/1129 (75%), Gaps = 99/1129 (9%) Strand=Plus/Plus Query 1 ATGAATTGTATGTTCGTGTTCAAGTCCAAGAAA-CCA-AAATCCAGA-AGAAATCTGAAG 57 ||||| ||| ||||| ||||||| || |||||| ||| ||| || | ||||| || Sbjct 382 ATGAACTGTCTGTTCTTGTTCAAATCAAAGAAACCCAGAAA-GCA-ACAGAAA-GACAAC 438 Query 58 AA-AGATAACAAAAACATAAGAGG-AAGAGAGTTTTTACAAAAGTCTGCTCCAGAATTAA 115 || | | ||| |||| | || ||| || |||||| |||||||| || ||||||||| | | Sbjct 439 AACA-AGAAC-AAAAGA-AA-AGGTAA-AGAGTTGTTACAAAACTCAGCTCCAGAACTGA 493 Query 116 CG-A-CAAGA-AG-AACATCTTTGTCGTTCAATCTCCCA-ACACCAAGATC-TCTGCCAT 169 || | | || | ||| || | ||||| ||||| ||| ||||||||||| | |||| | Sbjct 494 CGAATC-GGAGTGAAACGTC--T-TCGTTTAATCT-CCAGACACCAAGATCGT-TGCCTT 547 Query 170 CTCCAACG-AGTATCAAAGACTTGTACACTGAGAGAGAGCAAAATCAAAATCAAAACCTA 228 |||||| | ||||||||||| ||||| || |||||||| || |||||| || Sbjct 548 CTCCAA-GAAGTATCAAAGATTTGTATAC--AGAGAGAG---AA-CAAAAT------CTT 594 Query 229 ATGGTTTTCTCTTAC-AAGGAACTGAGTGACGCCACGTGTGAGTTTAGCAGAAAGC-TGA 286 | |||||| |||||| || ||||| ||| | ||||| | || |||||||||||||| || Sbjct 595 AGGGTTTTTTCTTACGAA-GAACTCAGTAAAGCCACTTATGTGTTTAGCAGAAAGCTTG- 652 Query 287 AGATCGGAGAAGGTGGTTTTGGTAGTGTCTATAAAGCCACCATTGACAATCCCACCGGA- 345 |||||| |||||||| ||||||| ||| ||||||| | | | | || || | | Sbjct 653 TGATCGGTGAAGGTGGATTTGGTATTGTTTATAAAG-GA--A---AGATTCTCAGC-AAT 705 Query 346 GGAGATTC-TCATTCTTCTCCACTTACCGTCGCCATTAAGAAACTTAATCGACAAAGTCT 404 |||||||| || | | |||||||| ||| ||||| |||||||| ||||||||| || | Sbjct 706 GGAGATTCTTC-TGATCCTCCACTTGTCGTTGCCATCAAGAAACTCAATCGACAAGGTTT 764 Query 405 ACAGGGTCACAAGCAATGGCTAGCAGAGGTTCA-TTTGTTGGGCGTGGTGAATCACCCTA 463 ||||||||||||||||||||||||||||||||| ||| |||| || |||||||| || | Sbjct 765 ACAGGGTCACAAGCAATGGCTAGCAGAGGTTCAGTTTCTTGGA-GTAGTGAATCATCCGA 823 Query 464 ACGTAGTGAGGCTCTTAGGGTATTGTTCAGAGGAC----AGA--G--A--GAGA--CTTT 511 |||| |||| |||| |||| ||||| || || ||| ||| | | |||| |||| Sbjct 824 ACGTTGTGAAGCTCATAGGTTATTGCTCGGAAGACGGCGAGACCGGGATCGAGAGGCTTT 883 Query 512 TGGTTTACGAGTTGATGTCTAATCGTAGTTTGGAGGATCATCTCTTCACTCGAAAAAC-C 570 ||||||| |||| ||||| ||||| ||||| || || ||||||||| |||| | | | Sbjct 884 TGGTTTATGAGTACATGTCGAATCGAAGTTTAGAAGACCATCTCTTCCCTCGTCGATCAC 943 Query 571 TTAACGTTGTCATGGAAACAAAGGCTTGAGATCATGCTTGGTGCAGCTCAAGGATTGGCT 630 | | || | |||||| |||| || ||||||||||||||||| ||| |||||||| || Sbjct 944 ACA-CATTACCGTGGAAAAAAAGACTCGAGATCATGCTTGGTGCTGCTGAAGGATTGACT 1002 Query 631 TATTTGCACGAAATCCAGGTAATATACAGAGACTTT-AAATCATCAAATGTGCTTTTAGA 689 ||||| || || | |||| ||||| ||||| ||| ||||| || |||||||||||||| Sbjct 1003 TATTTACATGATCTTAAGGTGATATATAGAGA-TTTCAAATCCTCTAATGTGCTTTTAGA 1061 Query 690 CGAAGAATT-TCATCCGAAATTATCGGATTTTGGTCTCGCTAGAGAAGGTCCGGAAGGAG 748 ||| |||| | ||| ||||||||||| ||||| || || |||||||| || || || | Sbjct 1062 CGATCAATTCTG-TCCAAAATTATCGGACTTTGGGCTTGCCAGAGAAGGACCTGATGGCG 1120 Query 749 ACAATACTCACGTTACAACCGCAAGAATTGGAACGGACGGCTATGCAGCACCAGAGTATG 808 |||||||||| || || ||||||||| ||||||| |||||||||| || || || || | Sbjct 1121 ACAATACTCATGTCACTACCGCAAGAGTTGGAACACACGGCTATGCGGCTCCGGAATACG 1180 Query 809 TA-ATAACCGGCCATCT-CAA--AACACATTGCGATGTCTATAGCTTTGGAGTTGTTTTG 864 | | ||| || ||||| | || | | |||| ||||||||||| || ||||| | Sbjct 1181 TGCA-AACAGGTCATCTTCGGTTAA-AGA--GCGACGTCTATAGCTTCGGTGTTGTGCTC 1236 Query 865 TACGAGATCATCACTGGTCGTC-GCAC-ATTG-GAACGAATGAAACCTTTGGCTGAACAA 921 ||||||||||| || || || | | || |||| || ||| || || ||||||||| | Sbjct 1237 TACGAGATCATAACCGGACG-CAGAACCATTGAGAG-GAAC-AAGCCAGTGGCTGAACGA 1293 Query 922 AAGCT-TCTAGAATGGGTCCAAGAATATCCTG-TCGATAG-CAAAAGATTCAAAAAGATC 978 | ||| | | || |||||| |||| ||||||| | ||||| ||| | |||| | |||| Sbjct 1294 AGGCTAT-TGGATTGGGTCAAAGAGTATCCTGCT-GATAGTCAAC-GTTTCAGCATGATC 1350 Query 979 ATTGACCCGAAGCTATGCAATAAATATC-ATCTTCCTATG-G-TCAGGAGAGTGGCTAAA 1035 ||||||| | || |||| || |||| | || | | | | | ||||| |||||||| Sbjct 1351 GTTGACCCTCGGTTACGCAACAATTATCCAGCTGC-TG-GAGCT-AGGAGTTTGGCTAAA 1407 Query 1036 TTGGCTGATCATTGTGTGAACAAGATCGATAAAAAGAGACCCACCATGG 1084 |||||||||| ||| |||| |||| ||||||| || |||| || |||| Sbjct 1408 TTGGCTGATCTTTGCCTGAAAAAGAACGATAAAGAGCGACCTACGATGG 1456 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57730626750 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5