BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890457
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17565.1 | Symbols: | F-box family protein with a domain of... 1225 0.0
> AT4G17565.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr4:9782508-9783644 REVERSE
LENGTH=1137
Length=1137
Score = 1225 bits (663), Expect = 0.0
Identities = 954/1090 (88%), Gaps = 37/1090 (3%)
Strand=Plus/Plus
Query 3 GTGGTCGGAGCTTTGTCCGGACTTGTTACGAAGTATTTTCGAAGAATTGAGTTTAACAAA 62
||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||
Sbjct 51 GTGGTCGGAGCTTTGTCCGGACTTGTTACGAAGTATTTTCGAACAACTGAGTTTCACAAA 110
Query 63 TCTCAATCGAGCAAAATTAGTGTGTAGATCATGGAACTCTGCTTCGAGAGGCTGCGTCCC 122
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 111 TCTCAATCGAGCAAAATTAGTTTGTAGGTCATGGAACTCTGCTTCGAGAGGCTGCGTTCC 170
Query 123 CAAACGAAATCAGATTCCGTGGCTGATACTTTTCCCTCAAAAGAACGAAAACAATAGTAG 182
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 171 CAAACGAAATCAGATTCCGTGGATGATACTTTTCCCTCAAAAGAGCGAAAACAATAGTAG 230
Query 183 CAATCACTATGTATTATTCGTTCCTGATGATAAAGACAAAGTTTACAAGACTCGAGATCT 242
|||| ||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 231 CAATAACTGTGTTTTATTCGTTCCTGATGATAACGACAAAGTTTACAAGACTCGAGATCT 290
Query 243 CGGTGTTGACTTTGCGCAGAGT-TGTTGCCTTGCGACTCACGGTAGCTGGCTCTTGATGT 301
||||||||||||||| || ||| | ||| ||||||||| |||||||||||||||||||||
Sbjct 291 CGGTGTTGACTTTGCACAAAGTAT-TTGTCTTGCGACTTACGGTAGCTGGCTCTTGATGT 349
Query 302 ATGACCATCTTCAGAATCTTTACATTCTTAATCCATTGACGTTAGAGAGGGTTGATCTAC 361
| ||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 350 TTAACCATCTTCGGAATCTCTACATTCTTAATCCATTGACGTTAGAGAGGATTGATCTAC 409
Query 362 CACATTC-AGCCTCTATCTTTCCTAATAAGCT-CAATCCAAATTTTAGATGCAACCGATC 419
||||||| | |||||||| ||| |||| | | | ||||||| || | || | |||||||
Sbjct 410 CACATTCCA-CCTCTATCAATCCAAATATG-TGCTATCCAAACTTCAAATACTACCGATC 467
Query 420 AGCTTGTCTCTGGATAGACGACATAGCCAAAGATTACCTAGTTGTTTGGCTCATCGATTA 479
|||||||||||||||| || ||||| |||||||||||||||||||||||| |||| || |
Sbjct 468 AGCTTGTCTCTGGATAAACAACATAACCAAAGATTACCTAGTTGTTTGGCCCATCTATAA 527
Query 480 CAAAAGTTATTTTGCAAAGAAAGGTGATGATACATGGC--TTC-C-C--GCTGGTCTGTT 533
|||| ||| |||| |||||||||||||||| ||||||| ||| | | ||| ||| |
Sbjct 528 CAAATGTTTTTTTACAAAGAAAGGTGATGACACATGGCGATTCGCTCCCGCTTGTCACAT 587
Query 534 TTGGA--AT-GATCGAATTATCTATAATCACAAAGATCACAAGGTCTTTC-AGTATTCTT 589
| ||| | |||| |||||||||||||||||||||||||||||| || | ||||| |||
Sbjct 588 TCGGATGAAAGATCAAATTATCTATAATCACAAAGATCACAAGGT-TTACCAGTATGCTT 646
Query 590 CCT----CTTATGTCTGTGTTTGGGATTTCGCTAGTGATATCCCTCATGTAGATAAGCAT 645
||| ||| | ||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 647 CCTATGGCTT-TATCTATGTTTGGGATTTCTCTAGTGATATCCCTCATGTAGATAAGCAT 705
Query 646 C-ATTTACCTGTTAGATCCA---CTGATCATCAGATTGGTGACGATAACAGATTCAATCT 701
| | | ||||||| | || ||| | | ||||||||||| | |||| || | ||
Sbjct 706 CTACC-AGCTGTTAGCTTCATTTCTGGCCGTGAGATTGGTGACAAGAACAAATACTATAG 764
Query 702 -AGTAAGTCATCAGATTGTAACATCATTGTCTGGAGAAGTTGTGCTGGTAAAAATAATGC 760
| ||||||||||||| || | ||||||||||||||||||||| |||||||||||||||
Sbjct 765 GA-TAAGTCATCAGATGGTGATGTCATTGTCTGGAGAAGTTGTGGTGGTAAAAATAATGC 823
Query 761 ACCACTACAACCTCCCA-GTATGGCGTTTTCGCGTCTACGAGTTAAATCTTTTGACGGAG 819
|| ||||| ||||| || | ||||||||||||| ||| ||||||||||| | ||||| ||
Sbjct 824 ACTACTACGACCTCTCAAG-ATGGCGTTTTCGCATCTTCGAGTTAAATCCTCTGACGCAG 882
Query 820 ACATTGATTAAAATT-GATTCTTTAGGTGATGCGGCTATAATCTTGGACATGAGTATCAC 878
| || | | |||| | |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 883 AGATGGGT-AAAAGTCGATTCTTTAGGTGATGCGGCTATAATCTTGGACATGGGTATCAC 941
Query 879 TGTTGTCGCCAAATATATCCCAGGGATAAAGAAAAACTCCATTTATTTCAGTGGCCTCGA 938
||||||||| ||| |||| |||||||| |||||||||||||||||||||||||||||| |
Sbjct 942 TGTTGTCGCTAAAGATATTCCAGGGATCAAGAAAAACTCCATTTATTTCAGTGGCCTCAA 1001
Query 939 CCACCCCACAACGGATCCCAAACT-TAAATTTGTCTATGATCTCACCACCCACACCATGG 997
||||||| |||||||||| || | || |||||||||||||||||| ||| ||||||||
Sbjct 1002 CCACCCCTTAACGGATCCCGAA-TGTAGATTTGTCTATGATCTCACAACCGGCACCATGG 1060
Query 998 AACCTTTGCCACAATGCGT-CTTCTCCTCCATGCTCTTCTCTGATTCTCGATGGTTCTTA 1056
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1061 AACCTTTGCCACAATGCGTTCT-CTCCTCCATGCTCTTCTCTGATTCTCGATGGTTCTTA 1119
Query 1057 CCTGGTTTCA 1066
||||||||||
Sbjct 1120 CCTGGTTTCA 1129
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52610171160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5