BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890460
Length=1008
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17550.1 | Symbols: | Major facilitator superfamily protein... 883 0.0
> AT4G17550.1 | Symbols: | Major facilitator superfamily protein
| chr4:9777648-9779738 REVERSE LENGTH=1925
Length=1925
Score = 883 bits (478), Expect = 0.0
Identities = 535/562 (95%), Gaps = 5/562 (1%)
Strand=Plus/Plus
Query 451 ACTATTGGTGGAGAGTACGTGTCTGTGAAAACAGCAGGAAATCTCTCCACGCTATTTGAT 510
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1075 ACTATTGGTGGAGAGTACGTGTCTGTGAAAACAGCAGGGAATCTCTCCACACTATTTGAT 1134
Query 511 GTTGGAGGCATTGTAGGAGGGATTCTTTGTGGTTACATTTCAGACAAATTCAAAGCAAGG 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 GTTGGAGGCATTGTAGGAGGGATTCTTTGTGGTTACATTTCAGACAAATTCAAAGCAAGG 1194
Query 571 GCTACAACTGCAGCAGCATTCATGTACGCTGCAATTCCAGCAATGCTTGTGTACCATTCC 630
|||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1195 GCTACAACTGCAGCTGCATTCATGTACGCTGCGATTCCGGCAATGCTTGTGTACCATTCC 1254
Query 631 TATGGAGGTGTCTCTCAGACAGTCAACATCCTCCTCATGATGGTTGCTGGTTTGTTTGTC 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 TATGGAGGTGTCTCTCAGACAGTCAACATCCTCCTCATGATGGTTGCTGGTTTGTTTGTC 1314
Query 691 AATGGTCCTTATGCACTCATCACAACCGCAGTCTCAGCGGATCTTGGAACCCACAAGTCT 750
||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 1315 AATGGTCCTTATGCACTCATCACAACCGCAGTCTCTGCGGATCTGGGAACGCACAAGTCT 1374
Query 751 TTACAAGGCGATTCAAGGGCGCTTGCAACTGTGACTGCAATTATTGATGGTACTGGATCT 810
|||||||||||||||||||||||||| ||||| ||||| || ||||| || |||||||||
Sbjct 1375 TTACAAGGCGATTCAAGGGCGCTTGCGACTGTTACTGCTATCATTGACGGGACTGGATCT 1434
Query 811 GCTGGTGCGGCTTTAGGTCCGCTTTTGACAGGGTTTCTTTCGAC-CATGGGCTGGCAAGC 869
|| |||||||||||||||||||||||||||||||||||||| || | |||| ||||||||
Sbjct 1435 GCCGGTGCGGCTTTAGGTCCGCTTTTGACAGGGTTTCTTTCTACTC-TGGGTTGGCAAGC 1493
Query 870 TGTGTTCTATATGTTAGTCGTTGGAGCTCTTTGTGCTGGTTTGCTTTTGACCCGTCTGGT 929
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1494 TGTGTTCTATATGTTGGTCGTTGGAGCTCTCTGTGCTGGTTTGCTTTTGACCCGTCTGGT 1553
Query 930 TATTGCTGAAATTAGAGAGAAACTTGGATATGTTGATGAAG---TTCCTGCGTCTGAACC 986
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1554 TATTGCTGAAATTAGAGAGAAACTTGGATATGTTGATGAAGAAGTTCCTGCTTCTGAACC 1613
Query 987 ACTGTTAACAGACAGAAGATGA 1008
||||||||| || |||||||||
Sbjct 1614 ACTGTTAACCGATAGAAGATGA 1635
Score = 719 bits (389), Expect = 0.0
Identities = 438/460 (95%), Gaps = 9/460 (2%)
Strand=Plus/Plus
Query 1 ATGGCGATGAATTCGAAGAGGAAAACACCACCTGGGATTGCGCTTCTGAGAAGAGCCAGA 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1 ATGGCGATGAATTCGAAGAGGAAAACACCACCTGGGATTGCGCTTCTGAGGAGAGTCAGA 60
Query 61 GGAAGAAATTGGAGTCCAAAGACGTTTCGGTACGCGATTTTGTTGATTACTTTCATCGCG 120
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 GGAAGAAATTGGAGTCCAAAGACGTTTCGGTACGCGATTTTGTTTATTACTTTCATCGCA 120
Query 121 TATGCTTGTTACCATGCTTCTCGTAAACCAAGCAGCATAGTGAAGAGCGTTTTACACCCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TATGCTTGTTACCATGCTTCTCGTAAACCAAGCAGCATAGTGAAGAGCGTTTTACACCCA 180
Query 181 GACTCAAGCACTAAGCCACCTCAAGAACACAACAGCAACAAAATTTATCCTTGGCCTATG 240
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 181 GACTCAAGCACTAAGCCACCTCAAGAACATAACAGCGACAAAATTTATCCTTGGCCTATG 240
Query 241 GGCAGGGTGTTTGTGAAGAGAGAAATTG---AT---GA-G-G-TTTTGTTGCATCGTAAC 291
|| | |||||||||||||||||||||| || || | | ||||||||||||||||
Sbjct 241 GGTAACGTGTTTGTGAAGAGAGAAATTGGTGATATAGATGAGGTTTTGTTGCATCGTAAG 300
Query 292 TCTAAAGGATGGGAACCGTTTAATGGGAAAGATGGGACGTCTAGGTTGGGAGAGATTGAT 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCTAAAGGATGGGAACCGTTTAATGGGAAAGATGGGACGTCTAGGTTGGGAGAGATTGAT 360
Query 352 GTAGCGTTTCTTGCTTGTTACTCTATAGGAATGTATGTTGCTGGACATTTGGGTGATAGT 411
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 GTGGCGTTTCTTGCTTGTTACTCTATAGGAATGTATGTTGCTGGTCATTTGGGTGATAGT 420
Query 412 TTGGATCTGAGATTGTTTCTTACTTGGGGAATGATTGGGA 451
|||||||||||||||||||| |||||||||||||||||||
Sbjct 421 TTGGATCTGAGATTGTTTCTGACTTGGGGAATGATTGGGA 460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49380166501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5