BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg890477

Length=420
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G17430.1 | Symbols:  | O-fucosyltransferase family protein |...   158    5e-38


> AT4G17430.1 | Symbols:  | O-fucosyltransferase family protein 
| chr4:9724840-9726828 REVERSE LENGTH=1912
Length=1912

 Score =  158 bits (85),  Expect = 5e-38
 Identities = 93/97 (96%), Gaps = 0/97 (0%)
 Strand=Plus/Minus

Query  201  TTTTTATACGTCCAAACTGTGGTTCTACAATCTTCATCAACAGCATACAAACATTTATCT  260
            |||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct  758  TTTTTATAAGTCCAAACAGTGGTTCTACAATCTTCATCCACAGCATACAAACATTTATCT  699

Query  261  AGATTACCACGAACTCCAGATAACAAATAGCCACACT  297
            | |||||||||||||||||||||||||||||||||||
Sbjct  698  ACATTACCACGAACTCCAGATAACAAATAGCCACACT  662


 Score = 76.8 bits (41),  Expect = 1e-13
 Identities = 49/53 (92%), Gaps = 0/53 (0%)
 Strand=Plus/Minus

Query  349   GCAAAACTTGATCAAATCACTCCACATTGGCTCATCCAGCAGATGAATCCAAT  401
             ||||||||| || |||||||| |||||||||||||||| ||||||||||||||
Sbjct  1621  GCAAAACTTAATAAAATCACTACACATTGGCTCATCCACCAGATGAATCCAAT  1569



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19906028604


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5