BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890488
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17350.1 | Symbols: | Plant protein of unknown function (DU... 2001 0.0
AT5G47440.1 | Symbols: | Plant protein of unknown function (DU... 1027 0.0
AT5G47435.2 | Symbols: | formyltetrahydrofolate deformylase, p... 111 1e-23
> AT4G17350.1 | Symbols: | Plant protein of unknown function (DUF828)
with plant pleckstrin homology-like region | chr4:9701132-9703574
FORWARD LENGTH=1884
Length=1884
Score = 2001 bits (1083), Expect = 0.0
Identities = 1173/1218 (96%), Gaps = 0/1218 (0%)
Strand=Plus/Plus
Query 1 ATGGAAAGTGGGTTTTATTCAGATTGGAAAGATACTTCTTCTTCTTCGTTGTTTGGATCA 60
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 451 ATGGAAAGTGGCTTTTATTCAGATTGGAAAGATACTTCTTCTTCTTCGTTCTTTGGATCA 510
Query 61 GATAATATGGAGGCAGAGTTGGAAGATGGAGTTCTCAGAGCTGAAGAGCTGTTCTCATCG 120
|| |||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 511 GAGAATATGGAGGAAGAGTTGGAAGATGGAGTTCTTAGAGCTGAAGAGCTTTTCTCATCG 570
Query 121 ATTCCTCAGCCTCAGACACCAAAAGAGCCAATGGAGTTTCTATCTAGATCCTGGAGTCTC 180
|||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 571 ATTCCTCAACCTCAGACACCTAAAGAGCCAATGGAGTTTCTGTCTAGATCCTGGAGTCTC 630
Query 181 TCTACTTCTGAAATCTCCAAAGCACTTGCTCTCAAACATAGACAACAACAAGAACAGTTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 631 TCTACTTCTGAAATCTCCAAAGCACTTGCTCTCAAACATAGACAACAACAAGATCAGTTT 690
Query 241 TGTGTTGGCCAGAACAGTCCTCCTGTTTTGTTCCCTGATGCTGCTGCAGATCCACTCGTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 TGTGTTGGCCAGAACAGTCCTCCTGTTTTGTTCCCTGATGCTGCTGCAGATCCACTCGTG 750
Query 301 GCTGGGAAGATCATGAACTCTGTTGGCACACGCAGAGCAGGGACATTATCCAAATGGTTT 360
|||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 751 GCTGGGAAGATCATGAACTCTGTTGGCACACGTAGAGCAGGGACATTGTCTAAATGGTTT 810
Query 361 CACCACCACAAGGAACACAGCAGCAGCAGCACTACCATCAATCTCAAGAAGAAAGACAAG 420
|||||| ||||||||||||||| |||||| ||||| | |||||||||||||||||| ||
Sbjct 811 CACCACAACAAGGAACACAGCACCAGCAGTACTACTACCAATCTCAAGAAGAAAGATAAA 870
Query 421 GTGCGTGTTGAGAACGCCCACGTGCATTCTGCCGTCTCTATAGCGGCTCTGGCTGCAGGC 480
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 GTGCGTGTGGAGAACGCCCACGTGCATTCTGCCGTCTCTATAGCGGCTCTGGCTGCAGGT 930
Query 481 TTAGCCTCTGTAACATCTGCAACCAGTTGCAAAGGGTCAGGCTCCAAGATGGCACTGGCT 540
||||||||||| |||||||| | || ||||||||||||||||||||||||||||||||||
Sbjct 931 TTAGCCTCTGTGACATCTGCTAGCAATTGCAAAGGGTCAGGCTCCAAGATGGCACTGGCT 990
Query 541 TTAGCCTCAGCCACTGAACTGTTGGCCTCACACTGTGTTGAGATGGCTGAGCGGGCCGGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 991 TTAGCCTCAGCCACTGAACTGTTGGCCTCACACTGTGTTGAGATGGCTGAGCGAGCCGGT 1050
Query 601 GCTGACCGTGCACGTGTTACTTCCACGGTTAGATCTTCTGTGGATATCCACAGCCCTGGT 660
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1051 GCTGACCATGCACGTGTTACTTCCACGGTTAGATCTTCTGTGGATATCCACAGCCCCGGT 1110
Query 661 GATCTCATGACTCTAACAGCCGCTGCTGCAACTGCTTTGAGAGGAGAAGCGGCTCTGAAG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GATCTCATGACTCTAACAGCCGCTGCTGCAACTGCTTTGAGAGGAGAAGCGGCTCTGAAG 1170
Query 721 GCAAGGCAGCCAAAGGAAGCAAGGAAAAATGCAGCTATTACCCCTTTTGAGAGAAGCTTC 780
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1171 GCGAGGCAGCCAAAGGAAGCAAGGAAAAATGCAGCTATTACCCCTTTTGAGAGAAGTTTC 1230
Query 781 TCTGATTCTCATTGGCATGCAAATTTTCAGTTTAGATTGGAAGAACCAAATCTTCCATTT 840
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1231 TCTGATTCTCATTGGCATGCAAATTTTCAGTATAGATTGGAAGAACCAAATCTTCCATTT 1290
Query 841 GAAGGTGAACTGATGCAATGTGCGCGAAATGGAGTGCAGCGAACTAAGCGTGTCTGCGTC 900
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1291 GAAGGCGAACTGATGCAATGTGCACGAAATGGAGTGCAGCGAACTAAGCGTGTCTGTGTC 1350
Query 901 TATATCAACAAGAAGTCTCAGGTAATGATCAAACTCAAAAGTAAACATGTTGGAGGGGCA 960
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1351 TATATCAACAAGAAGTCTCAGGTAATGATCAAACTCAAAAGCAAACATGTTGGAGGGGCA 1410
Query 961 TTCTCCAAGAAGATCAAATGTGTTGTCTATGGAGTCTGCGATGAGAAATCAGCTTGGCCT 1020
||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1411 TTCTCTAAGAAAATCAAATGCGTTGTCTATGGAGTCTGCGATGAGAAATCAGCTTGGCCT 1470
Query 1021 TACAGGAAAGAGAGAGAAAATTCAGAAGAAGTCTACTTTGGTCTGAAAACCGGACAAGGT 1080
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1471 TACAGGAAAGAGAGGGAAAATTCAGAAGAAGTCTACTTCGGTCTGAAAACCGGACAAGGT 1530
Query 1081 CTTTTGGAGTTCAAGTGCAAGAACAAGATTCACAAGCAGAGATGGGTTGATGGGGTTCAG 1140
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1531 CTTTTGGAGTTCAAGTGCAAGAGCAAGATTCACAAGCAGAGATGGGTTGATGGGGTTCAG 1590
Query 1141 TCTCTTCTCCGCCAAGTAAATTGCTTTGAGGCTGCCAAATGCTCGCTGGGATCTCTGAGT 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1591 TCTCTTCTCCGCCAAGTAAATTGCTTTGAGGCTGCCAAATGCTCGCTGGGATCTCTGAAT 1650
Query 1201 CTCACCGGTCACACATGA 1218
||||| |||||||| |||
Sbjct 1651 CTCACTGGTCACACGTGA 1668
> AT5G47440.1 | Symbols: | Plant protein of unknown function (DUF828)
with plant pleckstrin homology-like region | chr5:19243531-19245350
REVERSE LENGTH=1406
Length=1406
Score = 1027 bits (556), Expect = 0.0
Identities = 1005/1221 (82%), Gaps = 34/1221 (3%)
Strand=Plus/Plus
Query 1 ATGGAAAGTGGGTTTTATTCAGATTGGAAAGATACTTCTTCTTCTTCGTTGTTTGGATCA 60
|||||| ||||||||||||| |||||||| |||| ||| | || ||||| || ||||||
Sbjct 147 ATGGAAGGTGGGTTTTATTCCGATTGGAATGATAGTTC--C-TCGTCGTTATTCGGATCA 203
Query 61 GATAATATGGAGGCA-GAGTTGGAAGATGGAGTTCTCAG-AGCTGAAGAG-CTGTTCTCA 117
|| ||| ||| ||| |||||||| || ||| | | || || ||||||| || ||||
Sbjct 204 GAGAATCCGGA-GCACGAGTTGGAGGAAGGAAATGTAAGAAG-TGAAGAGATTG-TCTC- 259
Query 118 TC-GATTCCTCAGCCTCAGACACCAAAAGAGCCAATGGAGTTTCTATCTAGATCCTGGAG 176
|| ||| ||||||||||||||||||| ||||||||| |||||||||| ||||| |||||
Sbjct 260 TCAGATACCTCAGCCTCAGACACCAAGGGAGCCAATGAAGTTTCTATCCAGATCATGGAG 319
Query 177 TCTCTCTACTTCTGAAATCTCCAAAGCACTT-GCTCTCAAACATAGACAACAACAAGAAC 235
||| ||| ||||||||||||||||||| || || | ||||| |||||||| | ||| |
Sbjct 320 TCTATCTGCTTCTGAAATCTCCAAAGC-TTTGGCGCAGAAACAGAGACAACAGCGAGATC 378
Query 236 AGTTTTGTGTTGGCCAGAACAGTCCTCCTGTTTTGTTCCCTGATGCTGCTGCAGATCCAC 295
||||| |||| ||||||||||||| | || |||| |||| ||||||||||||||
Sbjct 379 TGTTTTCTGTTTCCCAGAACAGTCCTAGAGGCTTCTTCCAAGATGTTGCTGCAGATCCAC 438
Query 296 TCGTGGCTGGGAAGATCATGAACTCTGTTGGCACACGCAGAGCAGGGACATTATCCAAA- 354
|| |||| | ||| ||||||||||| | ||| || || ||| |||||| ||||| ||||
Sbjct 439 TCATGGCAGAGAATATCATGAACTCAGCTGGAACCCGTAGATCAGGGAGATTAT-CAAAG 497
Query 355 TGGTTTCACCACCACAAGGAACACAGCAGCAGC-AGCACTACCATCAATCTC-AAGAAGA 412
||||||||||| || || |||||| || | | ||||| | | | || | | |||||
Sbjct 498 TGGTTTCACCA-CA-AA-CAACACACCAAC-CCAAGCACCATGAGGATTC-CGAGGAAGA 552
Query 413 AAGACAAGGTGCGTGTTGAGAACGCCCACGTGCATTCTGCCGTCTCTATAGCGGCTCTGG 472
|||| || | |||||| |||| ||||| || || || || || || || || |||||||
Sbjct 553 AAGATAAAGCGCGTGTACAGAAAGCCCATGTTCACTCAGCTGTGTCCATTGCAGCTCTGG 612
Query 473 CTGCAGGCTTAGCCTCTGTAACATCT---GCAACCAGTTGCAAAGGGTCAGGCTCCAAGA 529
| || || ||||| ||||| || ||| | || | | |||||| |||| |||||| ||
Sbjct 613 CAGCTGGGTTAGCATCTGTGACTTCTGAGGAAAGCTGCAGCAAAGAGTCATGCTCCATGA 672
Query 530 TGGCACTGGCTTTAGCCTCAGCCACTGAACTGTTGGCCTCACACTGTGTTGAGATGGCTG 589
||||||||||| |||||||||| || || || |||| |||||||| |||| |||||||
Sbjct 673 TGGCACTGGCTCTAGCCTCAGCAACAGAGCTACTGGCTTCACACTGCATTGACATGGCTG 732
Query 590 AGCGGGCCGGTGCTGACCGTGCA-C-GTGTTACTTCCACGGTTAGATCTTCTGTGGATAT 647
||| || || ||||| | || | ||||| |||||||||| || ||||| || |||||
Sbjct 733 AGCAAGCAGGCGCTGATC--ACACCTGTGTTGCTTCCACGGTCAGGTCTTCCGTTGATAT 790
Query 648 CCACAGCCCTGGTGATCTCATGACTCTAACAGCCGCTGCTGCAACTGCTTTGAGAGGAGA 707
|||||||||||| |||||||||||||| ||||| || ||||||||||| |||||||| ||
Sbjct 791 CCACAGCCCTGGCGATCTCATGACTCTCACAGCTGCGGCTGCAACTGCATTGAGAGGGGA 850
Query 708 AGCGGCTCTGAAGGCAAGGCAGCCAAAGGAAGCAAGGAAAAATGCAGCTATTACCCCTTT 767
||| ||| | |||| |||||||| |||||| ||||||| |||||| |||| || ||||
Sbjct 851 AGCAGCTTTAAAGGTGAGGCAGCCGAAGGAATCAAGGAAGAATGCAACTATCACACCTTG 910
Query 768 TGAGAGAAGCTTCTCTGATTCTCATTGG-CATGC--AAATTTTCAGTTTAGATTGGAAGA 824
||| || |||||||| || ||||| ||| | || ||||| ||||||||||||||| ||
Sbjct 911 TGAAAGGAGCTTCTCAGACTCTCACTGGCCCGGCGAAAATTGTCAGTTTAGATTGGAGGA 970
Query 825 ACCAAATCTTCCATTT-GAAGGTGAACTGATGCAATGTGCGCGAAATGGAGTGCAGCGAA 883
|||||| ||||| ||| || || |||||| |||||||||| ||||||||| |||||||||
Sbjct 971 ACCAAACCTTCC-TTTAGAGGGCGAACTGGTGCAATGTGCACGAAATGGATTGCAGCGAA 1029
Query 884 CTAAGCGTGTCTGCGTCTATATCAACAAGAAGTCTCAGGTAATGATCAAACTCAAAAGTA 943
|||||| || || |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1030 ATAAGCGAGTTTGTGTCTATATCAACAAGAAGTCTCAGGTCATGATCAAACTCAAAAGCA 1089
Query 944 AACATGTTGGAGGGGCATTCTCCAAGAAGATCAAATGTGTTGTCTATGGAGTCTGCGATG 1003
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1090 AACATGTTGGAGGGGCATTCTCCAAGAAGATCAAATGTGTTGTTTATGGAGTCTGCGACG 1149
Query 1004 AGAAATCAGCTTGGCCTTACAGGAAAGAGAGAGAAAATTCAGAAGAAGTCTACTTTGGTC 1063
||| ||| || ||||||| |||||||||||| |||||||| ||||||||||| |||||||
Sbjct 1150 AGATATCTGCATGGCCTTGCAGGAAAGAGAGGGAAAATTCCGAAGAAGTCTATTTTGGTC 1209
Query 1064 TGAAAACCGGACAAGGTCTTTTGGAGTTCAAGTGCAAGAACAAGATTCACAAGCAGAGAT 1123
||||||| ||||| |||||||| |||||||||||||||| ||||||||| ||||||||||
Sbjct 1210 TGAAAACAGGACAGGGTCTTTTAGAGTTCAAGTGCAAGAGCAAGATTCAGAAGCAGAGAT 1269
Query 1124 GGGTTGATGGGGTTCAGTCTCTTCTCCGCCAAGTAAATTGCTTTGAGGCTGCCAAATGCT 1183
|||||| |||| |||||||| ||||||| ||||| |||| | ||||||||||||||||
Sbjct 1270 GGGTTGCTGGGATTCAGTCTAATCTCCGCTTAGTAAGTTGCCTCGAGGCTGCCAAATGCT 1329
Query 1184 CGCTGGGATCTCTGAGTCTCA 1204
| |||| ||||||||||||||
Sbjct 1330 CTCTGGAATCTCTGAGTCTCA 1350
> AT5G47435.2 | Symbols: | formyltetrahydrofolate deformylase,
putative | chr5:19241703-19243988 FORWARD LENGTH=1532
Length=1532
Score = 111 bits (60), Expect = 1e-23
Identities = 64/66 (97%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 916 TCTCAGGTAATGATCAAACTCAAAAGTAAACATGTTGGAGGGGCATTCTCCAAGAAGATC 975
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1499 TCTCAGGTCATGATCAAACTCAAAAGCAAACATGTTGGAGGGGCATTCTCCAAGAAGATC 1440
Query 976 AAATGT 981
||||||
Sbjct 1439 AAATGT 1434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839049640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5