BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890493
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17280.1 | Symbols: | Auxin-responsive family protein | chr... 1875 0.0
AT5G47530.1 | Symbols: | Auxin-responsive family protein | chr... 832 0.0
> AT4G17280.1 | Symbols: | Auxin-responsive family protein | chr4:9678625-9680389
REVERSE LENGTH=1583
Length=1583
Score = 1875 bits (1015), Expect = 0.0
Identities = 1133/1191 (95%), Gaps = 3/1191 (0%)
Strand=Plus/Plus
Query 4 ATGAAGTTCTTGAATCAAATCCTCTGTCTCTCGCTTGTCCTTTCCATATCCATGAGTAGT 63
|||||||||||||||||||||||||||||||| ||| |||| ||||||||||| | | |
Sbjct 134 ATGAAGTTCTTGAATCAAATCCTCTGTCTCTCTCTTATCCTCTCCATATCCAT--G-ACT 190
Query 64 ACTCTTTCCTTTGCTCAGACATGTTCTAACTACAAGTTCTCAAGCAACAATGTCTTTGAC 123
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 191 ACTCTTTCCTTTGCTCAGACATGTTCTAAATACAAGTTCTCCAGCAACAATGTCTTTGAC 250
Query 124 TCCTGCAACGACCTCCCTTTTCTTGATTCTTTCCTCCATTACACTTACGAGTCTTCCACC 183
|| |||||||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 251 TCTTGCAACGATCTTCCTTTTCTTGATTCCTTCCTCCATTACACTTACGAGTCTTCCACC 310
Query 184 GGGAGCCTCCACATCGCTTATCGCCACACTAAGCTCACCTCTGGCAAATGGGTTGCTTGG 243
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 311 GGGAGCCTCCACATTGCTTATCGCCACACTAAGCTCACCTCTGGTAAATGGGTTGCTTGG 370
Query 244 GCCGTGAACCCAACGTCTACGGGAATGGTGGGAGCTCAAGCCATCGTGGCTTATCCACAA 303
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 371 GCTGTGAACCCAACGTCTACGGGAATGGTGGGAGCTCAAGCCATCGTTGCTTATCCACAA 430
Query 304 ACAGATGGTACTGTCAGGGTTTACACATCTCCCATCAGAAGCTACCAGACGAGCCTACAA 363
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
Sbjct 431 TCAGATGGTACTGTCAGGGTTTACACTTCTCCCATCAGAAGCTACCAGACGAGTCTACTA 490
Query 364 GAGGGTGATCTCAGTTTCAACGTCTCTGGGTTGTCTGCAACTTATGAGAACAATGAGATT 423
||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 491 GAGGGTGATCTGAGTTTCAATGTCTCTGGTTTGTCTGCAACTTACCAGAACAATGAGATC 550
Query 424 GTTGTGCTGGCAAGTCTGAAGCTTTCACAGGATCTTGGGAATGGTGGAACCATTAACACA 483
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 551 GTTGTGTTGGCAAGTCTGAAGCTTGCACAGGATCTTGGGAATGGTGGAACCATTAACACA 610
Query 484 GTGTGGCAAGATGGGCCAATGTCTGGGAACAGTCTTTTGCCTCATCCAACTTCTGGCAAC 543
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 611 GTGTGGCAAGATGGGTCAATGTCTGGGAACAGTCTTCTGCCTCATCCAACTTCTGGCAAC 670
Query 544 AATGTTCGATCCCTGTCCACTCTCAATCTGGTCTCCGGTGTTTCAGCAGCTGCTGGAGGA 603
||||||||||| |||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 671 AATGTTCGATCAGTGTCAACTCTCAATCTGGTATCCGGTGTTTCAGCAGCTGCAGGAGGA 730
Query 604 GCTGGAGGAAGTTCCAAGCTTCGAAAACGCAACATACATGGAATATTGAATGGTGTGAGC 663
||||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||
Sbjct 731 GCTGGAGGAAGTTCCAAGCTTCGCAAACGCAATATTCATGGAATATTGAATGGAGTGAGC 790
Query 664 TGGGGAATCATGATGCCAATAGGGGCAATCATTGCTCGATACTTGAGAGTAGCCAAATCA 723
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 791 TGGGGAATCATGATGCCACTAGGGGCAATCATTGCTCGATACTTGAGAGTAGCCAAATCA 850
Query 724 GCAGACCCTGCTTGGTTCTACATTCACGTTTTCTGCCAGGCTTCTGCTTACATCATCGGT 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 GCAGACCCTGCTTGGTTCTACATTCACGTTTTCTGCCAGGCTTCTGCTTACATCATCGGT 910
Query 784 GTTGCCGGATGGGCCACAGGTCTCAAACTCGGTGGCGACTCACCAGGAATTCAGTATAGC 843
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 911 GTTGCCGGATGGGCCACTGGTCTCAAACTCGGTGGCGACTCACCAGGGATTCAGTACAGC 970
Query 844 ACCCACCGTGCTATCGGGATCGCTCTCTTCTCTCTAGCGACAGTTCAGGTGTTTGCGATG 903
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 ACCCACCGTGCCATCGGGATCGCTCTCTTCTCTCTAGCGACAGTTCAGGTGTTTGCGATG 1030
Query 904 TTTCTGAGGCCAAAACCAGAGCACAAGCATAGGCTCTACTGGAACATTTACCACCATACG 963
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1031 TTTCTGAGGCCAAAACCAGAGCACAAGCATAGGCTCTACTGGAACATTTACCACCACACG 1090
Query 964 ATCGGCTACACTATAATCATCCTAGGGGTGGTTAACGTTTTCAAAGGGCTAGGCATATTG 1023
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1091 ATCGGCTACACGATAATCATCCTAGGGGTGGTGAACGTTTTCAAAGGGCTAGGCATATTG 1150
Query 1024 AGTCCCAAGAAGCAGTGGAAAAATGCTTACATTGGTATCATTGTTGCTCTCGCCATTGTG 1083
|||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||
Sbjct 1151 AGTCCCAAGAAGCAGTGGAAAAATGCCTACATCGGTATCATTGTTGTTCTCGCCATTGTG 1210
Query 1084 GCCACCGTACTCGAAGCCTTCACTTGGTATGTAGTCATTAAGAGAAGGAAACTGGAGGCC 1143
|||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1211 GCCACCCTACTCGAAGCCTTCACCTGGTATGTAGTCATTAAAAGAAGGAAACTGGAGGCT 1270
Query 1144 AAAACGGCTCAGCATGGAGCATCCAACGGCGCTCGGTCACAGTATGCTTAA 1194
||||||||||||||||||||||| |||||| ||||||| ||||||||||||
Sbjct 1271 AAAACGGCTCAGCATGGAGCATCTAACGGCACTCGGTCTCAGTATGCTTAA 1321
> AT5G47530.1 | Symbols: | Auxin-responsive family protein | chr5:19281374-19283061
FORWARD LENGTH=1476
Length=1476
Score = 832 bits (450), Expect = 0.0
Identities = 873/1077 (81%), Gaps = 29/1077 (3%)
Strand=Plus/Plus
Query 71 CCTTTGCTCAGACATGTTCTAACTACAAGTTCTCAAGCAACAATGTCTTTGACTCCTGCA 130
|||| ||||||| |||||| |||||||| ||||| | |||| | ||||||| || ||||
Sbjct 162 CCTTGGCTCAGAAATGTTCCAACTACAAATTCTCCACCAACCGTCTCTTTGAGTCTTGCA 221
Query 131 ACGACCTCCCTTTTCTTGATTCTTTCCTCCATTACACTTACGAGTCTTCCACCGGGAGCC 190
||||||| ||| |||||||||| |||||||| ||||||||||| ||||| | || | |
Sbjct 222 ACGACCTACCTGTTCTTGATTCCTTCCTCCACTACACTTACGATTCTTCTTCAGGCAATC 281
Query 191 TCCACATCGCTTATCGCCACACTAAGCTCACCTCTGGCAAATGGGTTGCTTGGGCCGTGA 250
|||| ||||| ||||||||||| ||||||||| | || |||||||| || ||||||||||
Sbjct 282 TCCAAATCGCGTATCGCCACACAAAGCTCACCCCCGGGAAATGGGTGGCATGGGCCGTGA 341
Query 251 A-CCCAACGTCTACGGGAATGGTGGGAGCTCAAGCCATCGTGGCTTATCCACAAACAGAT 309
| ||| || ||||| || ||||| |||||||||||||| ||||||||||||||| ||||
Sbjct 342 ATCCC-ACATCTACTGGCATGGTCGGAGCTCAAGCCATTGTGGCTTATCCACAATCAGAC 400
Query 310 GGTACTGTCAGGGTTTACACATCTCCCATCAGAAGCTACCAGACGAGCCTACAAGAGGGT 369
|| || || |||| ||| || || |||||||| |||||||| ||||| || | ||| | |
Sbjct 401 GGCACCGTTAGGGCTTATACGTCACCCATCAGTAGCTACCAAACGAGTCTCCTAGAAGCT 460
Query 370 GATCTCAGTTTCAACGTCTCTGGGTTGTCTGCAACTTATGAGAACAATGAGATTGTTGTG 429
|| || ||||||||||||||| ||||||||| ||||| | ||||| ||||| || |
Sbjct 461 GAGCTGAGTTTCAACGTCTCTCAGTTGTCTGCCACTTACCAAAACAACGAGATGGTCAT- 519
Query 430 CT-GGCAAGTCTGAAGCTTTCACAGGATCTTGGGAATGGTGGAACCATTAACACAGTGTG 488
|| |||| |||||| | ||| | | |||| ||||||||||| ||||||||| |||||
Sbjct 520 CTACGCAATTCTGAATC-TTC-C---A-CTTGCGAATGGTGGAATCATTAACACTGTGTG 573
Query 489 GCAAGATGGGCCAATGTCTGGGAACAGTCTTTTGCCTCATCCAACTTCTGGCAACAATGT 548
|||||||||| || |||| ||||||| || | ||||||||||||||||||||||||||||
Sbjct 574 GCAAGATGGGTCACTGTCAGGGAACAATCCTCTGCCTCATCCAACTTCTGGCAACAATGT 633
Query 549 TCGATCCCTGTCCACTCTCAATCTGGTCTCCGGTGTTTCAGCAGCTGC-TGGA--GGAGC 605
||| || | || ||||| || || ||||| |||| || | | | | | | |||||
Sbjct 634 TCGTTCTGTTTCTACTCTTAACCTTGTCTCTGGTGCATCTGGATCCACCTCTACCGGAGC 693
Query 606 TGGAGGAAG-TTCCAAGCTTCGAAAACGCAACATACATGGAATATTGAATGGTGTGAGCT 664
|||||| | ||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 694 AGGAGGA-GCTTCCAAGCTACGCAAACGCAACATACATGGAATATTGAACGGTGTGAGCT 752
Query 665 GGGGAATCATGATGCCAATAGGGGCAATCATTGCTCGATACTTGAGAGTAGCCAAATCAG 724
|||| || |||||||||||||| |||||||||||||| ||||||| ||| | |||||||
Sbjct 753 GGGGTATAATGATGCCAATAGGAGCAATCATTGCTCGCTACTTGAAAGTCTCAAAATCAG 812
Query 725 CAGACCCTGCTTGGTTCTACATTCACGTTTTCTGCCAGGCTTCTGCTTACATCATCGGTG 784
|||| ||||||||||||||| |||| |||||||||||| |||||||||||||||| ||||
Sbjct 813 CAGATCCTGCTTGGTTCTACCTTCATGTTTTCTGCCAGTCTTCTGCTTACATCATTGGTG 872
Query 785 TTGCCGGATGGGCCACAGGTCTCAAACTCGGTGGCGACTCA-CCAGGAATTCAGTATAGC 843
||||||| ||||| || ||||||||||| || ||| ||| || ||| |||||| || |
Sbjct 873 TTGCCGGTTGGGCGACCGGTCTCAAACTGGGCAACGAATCAGCCGGGA-TTCAGTTTACC 931
Query 844 ACCCACCGTGCTATCGGGATCGCTCTCTTCT-CTCTAGCGACAGTTCAGGTGTTTGCGAT 902
||||||||| | |||||||||||||||| | || || ||| ||||||||||||| ||
Sbjct 932 TTTCACCGTGCTGTTGGGATCGCTCTCTTCTGC-CTCGCAACAATTCAGGTGTTTGCAAT 990
Query 903 GTTTCTGAGGCCAAAACCAGAGCACAAGCATAG-GCTCTACTGGAACATTTACCACCATA 961
|||| |||| || ||||||||||||||| | || | |||||||||||||||| ||||| |
Sbjct 991 GTTTTTGAGACCCAAACCAGAGCACAAGTACAGAG-TCTACTGGAACATTTATCACCACA 1049
Query 962 C-GATCGGCTACACTA-TAATCATCCTAGGGGTGGTTAACGTTTTCAAAGGGCTAGGCAT 1019
| | | ||||| | | | ||||| || | |||||| |||||||| ||||| |||| |||
Sbjct 1050 CTG-TAGGCTATTC-AGTGATCATTCTTGCGGTGGTAAACGTTTTTAAAGGACTAGACAT 1107
Query 1020 ATTGAGTCCCA-AGAAGCAGTGGAAAAATGCTTACATTGGTATCATTGTTGCT-CTCGCC 1077
|||| ||| |||||||||||| ||| ||||||| | || || || | | || |
Sbjct 1108 CCTGAG-CCCTGAGAAGCAGTGGAGAAACGCTTACACCGCCATAATCGTAG-TACTAGGT 1165
Query 1078 ATTGTGGCCACCGTACTCGAAGCCTTCACTTGGTATGTAGTCATTAAGAGAAGGAAA 1134
|| || || || ||||||| || ||||||||||||||||| |||||| |||||
Sbjct 1166 ATAGTCGCGGTTGTGCTCGAAGGGTTTACTTGGTATGTAGTCATAAAGAGAGGGAAA 1222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58634236560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5