BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890516
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17070.1 | Symbols: | peptidyl-prolyl cis-trans isomerases ... 1620 0.0
> AT4G17070.1 | Symbols: | peptidyl-prolyl cis-trans isomerases
| chr4:9595385-9598237 REVERSE LENGTH=1341
Length=1341
Score = 1620 bits (877), Expect = 0.0
Identities = 981/1032 (95%), Gaps = 3/1032 (0%)
Strand=Plus/Plus
Query 1 ATGCCCCGTCGATTAAACGACGTCGAGCCTGGCCGTTTTACCGCCACTGCTCTCCTTTTA 60
|||||||||||||||||||||| |||||||||||||||||||||||| | ||| ||||||
Sbjct 172 ATGCCCCGTCGATTAAACGACGGCGAGCCTGGCCGTTTTACCGCCACCGTTCTTCTTTTA 231
Query 61 ATCGGTTTGATCTCTTGTGTTATCGTCTACGCTGTCTTCTCTACTATCCTCCGTCC-T-- 117
|||||||| |||||||||||||||||||||||||| |||||| || |||||||||| |
Sbjct 232 ATCGGTTTAATCTCTTGTGTTATCGTCTACGCTGTTTTCTCTTCTGTCCTCCGTCCATCC 291
Query 118 CAAGATCCTACCCTCGTTGATTCCGCTGTTCGATTCACGGAGGGGTCGCGAGATCACGAC 177
||||||||||| |||||||||||||| |||||||||| |||| | |||||||||||||
Sbjct 292 CAAGATCCTACACTCGTTGATTCCGCGGTTCGATTCAAAGAGGAGCCGCGAGATCACGAT 351
Query 178 GCGGCTGAAGAAGGTGGAGGCGGGTGTTGCCGTGGAATTGATAATTTGGAGCTTTGGGGT 237
|| ||||||| |||| ||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 352 GCAACTGAAGACGGTGAAGGTGGGTGTTGCCGTGGAATTGATAATCTGGAGCTTTGGGGT 411
Query 238 CCGGCGGTGAAGTGGGGGACGGATTTTAAGTTTAATTCGTCGGATGGATGTTGTAAAGCT 297
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 412 CCGGCGGTGAAGTGGGGCACGGATTTTAAGTTTAATTCGTCTGATGGATGTTGTAAAGCT 471
Query 298 TGTAAAGTTATGTGTAGCGGTAACGATGGACCTTGCTTGTGCGATTCATGGGTCTTCTGT 357
||||||||||||||||| || |||||||||||||||||||||||||||||||| || |||
Sbjct 472 TGTAAAGTTATGTGTAGTGGCAACGATGGACCTTGCTTGTGCGATTCATGGGTGTTTTGT 531
Query 358 GGAAACAAAGACGCTTGTGGGTCGAAGTTTGGAGAGTGTTGGTTGAAGAAGCAAAAAGAT 417
|| |||||||| | |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 532 GGGAACAAAGAGGATTGTGGCTCGAAGTTTGGAGAGTGTTGGTTGAAGAAGCAAAAAGAT 591
Query 418 GTCTTGGTGCCTGATCGACAAGGAGGTGGGGAGAAAGTAATGTGGACATCTGGGCTTATC 477
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 592 GTCTTGGTGCCTGATCGACAAGGAGGTGGCGAGAAAGTAATGTGGACATCTGGACTTATC 651
Query 478 TTCGGACAAGGCCAGGGCATTGTTGGTTTTGAAACGGAACACGGCGTAATTCATGTCAAA 537
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 652 TTCGGACAAGGCCAGGGCATTGTTGGTTTTGAGACGGAACACGGCGTAATTCATGTCAAA 711
Query 538 CTTCACCCTGAGTGCGCTCCTCACTCAGTATACTACATTCTGAGTTTGTTAACTCTACGC 597
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 CTTCACCCTGAATGCGCTCCTCACTCAGTATACTACATTCTGAGTTTGTTAACTCTACGC 771
Query 598 CACTGTGCAGGCTGCCAGTTTCATCGAGCAGAGAACCGGGGATCATATTGGGACTCAGAA 657
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 CATTGTGCAGGCTGCCAGTTTCATCGAGCAGAGAACCGGGGATCATATTGGGACTCAGAA 831
Query 658 GGCAATCATGTAAAGAATGCTCCCTTTGGTCCACCATACGCTATGATTCAAGGAATACTC 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 GGCAATCATGTAAAGAATGCTCCCTTTGGTCCACCATACGCTATGATTCAAGGAATACTC 891
Query 718 CACGCCGAGGGAAACATGTTCACACCGATTCCAACCGAGCACTGCCCAACTATAAGACGT 777
|| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 892 CAGGCCGAGGGAAACATTTTCACACCGATCCCAACCGAGCACTGCCCAACTATAAGCCGT 951
Query 778 GGCTCGGTGGCGTGGGTCGGCTCGGGTCCAGAATTCTTCATCAGTTTAGCAAACCACCAC 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 GGCTCGGTGGCGTGGGTCGGCTCGGGTCCAGAATTCTTCATCAGTTTAGCAAACCACCAC 1011
Query 838 GAATGGAAACAATCTTACACTGTATTCGGCTCAGTTCTACCGGAAGACATGGATGTTGTG 897
|||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| |||
Sbjct 1012 GAATGGAAACAATCTTACACGGTATTCGGCTTAGTTCTACCAGAAGACATGGATGTCGTG 1071
Query 898 GAGACGATTGCCGGTTTACCGACAAGAGCCGATGTCTGGAACAGCGTCAATGTCTCTGTG 957
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1072 GAGACAATTGCCGGTTTACCAACAAGAGCCGATGTCTGGAACAGCGTCAATGTCTCTGTG 1131
Query 958 CTGGAGAAACCGGTGTCCTTAACCGTATGGAGAATGAAGACGGGCCAAGAACAAGAAGAA 1017
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1132 CTGGAGAAACCGGTTTCCTTAACCGTACGGAGAATGAAGACGGGCCAAGAACAAGAAGAA 1191
Query 1018 ACCGGTTCATGA 1029
||||||||||||
Sbjct 1192 ACCGGTTCATGA 1203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50435083588
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5