BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890555
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16700.1 | Symbols: PSD1 | phosphatidylserine decarboxylase ... 2036 0.0
> AT4G16700.1 | Symbols: PSD1 | phosphatidylserine decarboxylase
1 | chr4:9395636-9398308 REVERSE LENGTH=1588
Length=1588
Score = 2036 bits (1102), Expect = 0.0
Identities = 1280/1365 (94%), Gaps = 16/1365 (1%)
Strand=Plus/Plus
Query 1 ATGAAACCTCGCTTTT-CTCATAATGCCTACTTTTTAGCTCGCTATTCACATCTCCGTCG 59
||||||||||| |||| |||| |||| ||| ||||| |||||||||||| ||||||| ||
Sbjct 48 ATGAAACCTCG-TTTTCCTCAAAATGTCTATTTTTTGGCTCGCTATTCATATCTCCGCCG 106
Query 60 CTTCCACCATAGTCATCGTCGAACTTTCAGCTCTTTTCTCAACAATATCCGTTCGAATTA 119
||| || |||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 107 CTTTCAGCATAGTCAACGTCGAACCTTCAGCTCTTTCCTCAACAATATCCGTTCGAATTA 166
Query 120 TTACGGCACTAGCGCTTCGTCTCTCGGCGGCAGCAGCGGAGCCGGA----G-G-CGGAGG 173
|| ||| || | |||||| |||||||||||||||||||||||||| | | ||||||
Sbjct 167 TTCCGGTGCTCGTGCTTCGCCTCTCGGCGGCAGCAGCGGAGCCGGAGCCGGAGCCGGAGG 226
Query 174 TGGTGGAACTGGAGATTCCAAAGGCAATGCTTTTCTTTTGCCCGGAGCAACAATGGCTAC 233
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 227 AGGTGGAACCGGAGATTCCAAAGGCAATGCTTTTCTTGTGCCCGGAGCAACAATGGCTAC 286
Query 234 TATCCTTATGCTTGGAGCTCTTCATGCCCGCCGACTCTATGAAGACAAGAAGATCGAAGA 293
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 287 TATCCTTATGCTTGGAGCTCTTCATGCTCGCCGCCTCTATGAAGACAAGAAGATCGAAGA 346
Query 294 GAAACGGGA-AAGGGGAATTGAGCTTGAGTTCCACCCAGATGTTAAAGCCTCGTTCCTTG 352
||||||||| || |||||| || |||||||||||||||||| | ||||||||||||||||
Sbjct 347 GAAACGGGAGAA-GGGAATCGAACTTGAGTTCCACCCAGATATCAAAGCCTCGTTCCTTG 405
Query 353 GAATTCTGCCTCTGCGATCAATCTCAAGAGCCTGGGGCTCCATAATGAGTCTGGAAATTC 412
|| |||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||
Sbjct 406 GAGTTCTGCCTCTGCGATCAATCTCAAGAGCTTGGGGCTCCTTTATGAGTCTGGAAATTC 465
Query 413 CGGTGTGGATGCGTCCGTATGCTTATAAAGCATGGGCTCGAGCTTTCCATTCAAATCTTG 472
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 466 CGGTGTGGATGCGTCCATATGCTTATAAAGCCTGGGCTCGAGCTTTCCATTCAAATCTTG 525
Query 473 AAGAAGCAGCTCTGCCTCTTAAAGAATATGCTTCGTTACAGGATTTCTTTGTCCGTAGCT 532
|||||||||||||||||||| |||||||| |||| || |||||||||||||| |||||||
Sbjct 526 AAGAAGCAGCTCTGCCTCTTGAAGAATATACTTCATTGCAGGATTTCTTTGTTCGTAGCT 585
Query 533 TGAAAGAAGGTTGCAGGCCTATCGACCCCGATCCTTGTTGTCTGGTTAGTCCTGTTGATG 592
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 586 TGAAAGAAGGTTGCAGGCCTATCGACCCTGATCCTTGTTGTCTGGTTAGTCCTGTGGATG 645
Query 593 GCACCATTCTAAGGTTTGGGGAGTTAAAA-GGAAGTAGAGGGATGATCGAGCAAGTCAAA 651
||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||| |||
Sbjct 646 GCACCGTTCTAAGGTTTGGGGAGTTAAAAGGGAA-TAGAGGGATGATCGAGCAAGTTAAA 704
Query 652 GGACATTCTTACTCAGTACCGGCTCTTCTAGGAAATAACTCTCTGCTTCCAATGGAACCT 711
|||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 705 GGACATTCTTACTCGGTACCAGCTCTTCTAGGAAATAACTCTCTGCTTCCCATGGAACCT 764
Query 712 GAAGGTAAAG-ATGAGTCTGAGGAAGAAGCTGTTGGAGATACGAGCGACAAATCTTGGTT 770
|||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 765 GAAGGT-AAGAATGAGTCTAAGGAAGAAGCTGTTGGAGATAAGAGCGACAAATCTTGGTT 823
Query 771 GAGAGTCTCTTTGGCATCTCCAAAATTACGGGAGAACATCTCAGCTAGTCCAATGAAGGG 830
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 824 GAGAGTCTCTTTGGCATCTCCAAAATTACGGGAGAACGTCTCAGCCAGTCCAATGAAGGG 883
Query 831 GCTCTATTATTGTGTGATATACCTAAGACCAGGGGACTATCATCGAATACACTCTCCGGT 890
||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 884 GCTCTATTATTGTGTAATATACCTAAAACCAGGGGATTATCATCGAATACACTCTCCGGC 943
Query 891 TGACTGGAATGCAA-TGGTCCGTCGACACTTTGCAGGCCGGTTGTTTCCCGTGAACGAGC 949
|||||||||||||| | || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 944 TGACTGGAATGCAACT-GTTCGTCGACACTTTGCAGGCCGGTTGTTTCCTGTGAACGAGC 1002
Query 950 GTGCTACAAGAACGATAAGGAATCTCTATGTCGAGAATGAAAGGGTTGTGCTTGAAGGGA 1009
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1003 GTGCTACAAGAACGATAAGGAATCTCTATGTCGAGAATGAAAGGGTTGTGCTAGAAGGGA 1062
Query 1010 TATGGAAAGAAGGTTTTATGGCACTTGCTGCTGTTGGTGCGACCAACATTGGATCCATTG 1069
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1063 TATGGAAAGAAGGTTTTATGGCACTTGCTGCTGTAGGCGCGACCAACATTGGATCCATTG 1122
Query 1070 AGCTTTTCATTGAACCTGAGCTAAGAACAAACAAGCCAAAGAAGAAGCTATTTCCTACAG 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1123 AGCTTTTCATTGAACCTGAGCTAAGAACAAACAAGCCAAAGAAGAAGCTATTTCCTACAG 1182
Query 1130 AGCCACCAGAGGAGCGGGTGTATGATCCAGAAGGTCTTGGCTTAAAGCTCGAGAAAGGGA 1189
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1183 AGCCACCAGAGGAGCGGGTGTATGATCCAGAAGGTCTTGGCTTAAGGCTCGAGAAGGGGA 1242
Query 1190 AAGAGGTAGGTGTATTCAACATGGGATCTACTGTAGTGCTCGTTTTCCAAGCACCAACCG 1249
||||||||| |||||||||||||||||| || ||||||||| |||| |||||||||||||
Sbjct 1243 AAGAGGTAGCTGTATTCAACATGGGATCAACCGTAGTGCTCATTTTTCAAGCACCAACCG 1302
Query 1250 CAAACTCACCCGAGGGTTCAAGCAGTTCCTCAGATTACAGATTCTGTGTTAAACAAGGAG 1309
||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1303 CAAACACACCCGAGGGTTCAAGCAGTTCTTCAGATTACAGATTCTGTGTCAAACAAGGAG 1362
Query 1310 ACAGAGTCCGCGTTGGACAAGCATTGGGAAGGTGGAATGAGGAAT 1354
||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1363 ACAGAGTCCGCGTTGGACAAGCATTGGGAAGATGGAAAGAGGAAT 1407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66766724850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5