BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890556
Length=174
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16695.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 289 7e-78
> AT4G16695.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 21 Blast hits to 21
proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr4:9394189-9395517 FORWARD LENGTH=510
Length=510
Score = 289 bits (156), Expect = 7e-78
Identities = 168/174 (97%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 1 ATGCCGTTTAAGACGGTGATAGAAGTGGAGCCTCCGAGTCTGTTACGGTACTTGATCGGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 ATGCCGTTTAAGACGGTGATAGAAGTGGAGCCTCCGAGTCTGTTACGGTACTTGATCGGA 130
Query 61 GCGGCGGTGATGATGATCGGCGTCGTATTACCCGTTGGTTACATGATGTTCCGCAACAAA 120
||||||||||||||||||| || |||||||| ||||||||||||||||| |||||||||
Sbjct 131 TCGGCGGTGATGATGATCGGTGTTGTATTACCGGTTGGTTACATGATGTTTCGCAACAAA 190
Query 121 CGCGTCCCCTTCTCGTCTTCGTACTCTAAACAGACGAACAAAGTTTTGATATAG 174
|||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 191 CGCGTCCCCTTCTCATCTTCGTACTCTAAACAGACGAACAAAGTTTTGATATAG 244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 7595504001
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5