BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg890558

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G16680.1 | Symbols:  | P-loop containing nucleoside triphosp...   542    1e-153


> AT4G16680.1 | Symbols:  | P-loop containing nucleoside triphosphate 
hydrolases superfamily protein | chr4:9387393-9390774 
REVERSE LENGTH=2962
Length=2962

 Score =  542 bits (293),  Expect = 1e-153
 Identities = 314/324 (97%), Gaps = 2/324 (1%)
 Strand=Plus/Plus

Query  1     AAGAAAGCAATCTTGGCCGGATTCTTCCCGCATTCTGCAAAGTTACAAAAGAATGGATCG  60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2142  AAGAAAGCAATCTTGGCCGGATTCTTCCCGCATTCTGCAAAGTTACAAAAGAATGGATCG  2201

Query  61    TACAGAAGAGTGAAAGAACCTCAGACAGTTTATGTACATCCTAACTCAGGCTTATTTGGG  120
             ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  2202  TACAGAAGAGTCAAAGAACCTCAGACAGTTTATGTACACCCTAACTCAGGCTTATTTGGG  2261

Query  121   GCGTCACCCAGTAAGTGGTTGGTGTATCATGAACTAGTACTTACTACCAAGGAATATATG  180
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2262  GCGTCACCTAGTAAGTGGTTGGTGTATCATGAACTAGTACTTACTACCAAGGAATATATG  2321

Query  181   AGGCATACAACTGAAATGAAGCCTGAGTGGCTAATTGAAATAGCTCCTCACTACTACGAG  240
             |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct  2322  AGGCATACAACTGAAATGAAGCCTGAGTGGCTAATTGAAATAGCTCCTCATTACTACAAG  2381

Query  241   CTTAAAGACATTGAAGATACTCGGCCAAAGAAAAAACAGAGAAGAAGCGAAAGA-GCCTC  299
             |||||||||||||||||||||||||||||||||| ||||||||||| |||| || |||||
Sbjct  2382  CTTAAAGACATTGAAGATACTCGGCCAAAGAAAACACAGAGAAGAATCGAA-GAAGCCTC  2440

Query  300   GACGTCAAAGGTTGATACTAACAA  323
             |||||| |||||||||||||||||
Sbjct  2441  GACGTCTAAGGTTGATACTAACAA  2464



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16437553923


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5