BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890575
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16570.1 | Symbols: ATPRMT7, PRMT7 | protein arginine methyl... 749 0.0
> AT4G16570.1 | Symbols: ATPRMT7, PRMT7 | protein arginine methyltransferase
7 | chr4:9336703-9340869 FORWARD LENGTH=2464
Length=2464
Score = 749 bits (405), Expect = 0.0
Identities = 515/563 (91%), Gaps = 27/563 (5%)
Strand=Plus/Plus
Query 1 ATGTCGTCTCTGTTTTCTCTTCTTCTTCCCAAAACCTTTA--T-CTCCTTCCGGTGCCAC 57
|||||| |||||| |||||||| | ||||||||| |||| | |||||||| ||||||
Sbjct 113 ATGTCGCCTCTGTCTTCTCTTC--C-TCCCAAAACATTTATCTCCTCCTTCCATTGCCAC 169
Query 58 TCAGTGACTCGCCTAAGAAGCTCCGTCGCTGCTCGAACCATGAGCTCTCAGTCTAGTCAA 117
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 170 TCAGTGACTCGCCTAAGAAGGTCCGTCACTGCTCGAACCATGAGCTCTCAGTCTAGTCAA 229
Query 118 CGCGTCTTCCAGCTCAGACAAGACCCTCTCACCGGCAATTCCGAGTGGATTGTCATCGAA 177
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 230 CGCGTCTTCCAGCTCAGACAAGACCCTCTCACCGGAAATTCCGAATGGATTGTCATTGAG 289
Query 178 GACAATGACCAACCCGGAACTTCCACTGACGGCCTCCTCGCCACGACGTCGTATCTCGAC 237
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 290 GACAATGACCAACCCGGAACTTCCACTGACGGCCTACTCGCGACGACGTCGTATCTCGAC 349
Query 238 ATGCTTAATGATTCTCGCCGCAACAGAGCTTATCGTCTCGCTATCGAGAAAACCATCACT 297
||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 350 ATGCTCAATGATTCTCGCCGTAACATAGCTTATCGTCTCGCTATCGAGAAAACCATCACT 409
Query 298 GAACCTTGCCACGTCCTTGACATTGGTGCTGGAACTGGGTTGCTATCGATGATGGCTGTG 357
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 410 GAACCTTGCCACGTCCTGGACATTGGTGCTGGAACTGGGTTGCTATCAATGATGGCTGTG 469
Query 358 AGAGCAATGAGAGGAGAAGAAGAAGAGTCTGGTGATTCAAAAGGAATGGTGACGGCGTGT 417
|||||||||||||| | | ||||||||||||||||||||||||||
Sbjct 470 AGAGCAATGAGAGG-------------T--G---ATTCAAAAGGAATGGTGACGGCGTGT 511
Query 418 GAGTCCTACTTACCGATGGTTAAGCTTATGAGGAAGGTTTTGCATAAGAATGGGATGACT 477
||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 512 GAGTCTTACTTACCGATGGTTAAGCTTATGAGGAAGGTTATGCATAAGAATGGAATGACT 571
Query 478 AAGAACATTAACCTTATCAACAAACGATCCGATGAACTCAAAGTTGGATCAGA---CATT 534
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 572 AAGAACATTAACCTTATCAACAAACGATCCGATGAACTCAAAGTTGGATCAGAAGACATT 631
Query 535 GCTTCACGAGCTGACGTTCTTGT 557
|||||||||||||||||||||||
Sbjct 632 GCTTCACGAGCTGACGTTCTTGT 654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33405707755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5