BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890578
Length=1752
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16550.1 | Symbols: | HSP20-like chaperone | chr4:9318442-9... 2350 0.0
AT4G16560.1 | Symbols: | HSP20-like chaperone | chr4:9324746-9... 1206 0.0
> AT4G16550.1 | Symbols: | HSP20-like chaperone | chr4:9318442-9324254
REVERSE LENGTH=2232
Length=2232
Score = 2350 bits (1272), Expect = 0.0
Identities = 1600/1750 (91%), Gaps = 56/1750 (3%)
Strand=Plus/Plus
Query 40 GATGGGTATTACTCTACGAACAATCCGTACCAAGTGAACGGACCAAAAGGTTTTACTGAG 99
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 GATGGGTATTACGCTACAAACAATCCGTACCAAGTGAACGGACCAAAAGGTTTTACTGAG 561
Query 100 TTCAAGTATCTGGAAGAGACCCATGATCTGTTCGTGAGGCTTGATTTCCCAGGAATCAAG 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 562 TTCAAGTATCTGGAAGAGACCCATGATCTGTTCGTGAGGCTTGATTTCCCAGGAATCCAG 621
Query 160 AAAGAGAGTGTGATTATCCTTCTCGAACCATTGAAAAAAGCTGTTATTGTGACCGGAGAC 219
|||||||||||||| |||||||||||||||| ||| |||||||| ||||||||||||||
Sbjct 622 AAAGAGAGTGTGATAATCCTTCTCGAACCATCGAAGAAAGCTGTCATTGTGACCGGAGAA 681
Query 220 GCACCTAAAGAGAGCAAACACGATTCTTCTCACCGCAAGTATGGAACCGCCACGGGACTA 279
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 682 GCACCCAAAGAGAGCAAACACGATTCTTCTCACCGTAAGTATGGAACCGCCACGGGTCTA 741
Query 280 ATCTGTGACTGCTGTGAAATCAGTAACATTCAGTGTTTTGTTGGTGATGGTGTCGTTAGA 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 ATCTGTGACTGCTGTGAAATCAGTAACATTCAGTGTTTTGTTGGTGATGGTGTCGTTAGA 801
Query 340 CTCATCCTCTCCAAGAAGAAGATCAATCTTCGCGTTCCTAATTTCTGTTCTTGTAAGATC 399
|| |||||||||||| |||||||||||||||| ||||||| ||||||||| |||||||||
Sbjct 802 CTTATCCTCTCCAAGCAGAAGATCAATCTTCGTGTTCCTATTTTCTGTTCCTGTAAGATC 861
Query 400 ATTAATCTTC-AAATGttttttttcttctcttttttttttttgtcttttttGTCGGAGGT 458
| |||||||| ||||| | || | ||||||| | | | ||||||||||||||
Sbjct 862 ACTAATCTTCAAAATG-------T-TT-T-GTTTTTTTGTCT-T-ATTTTTGTCGGAGGT 909
Query 459 GCAAGAATGCCTACTGATGCTCCTGCTAACATCATTCGTGGCTATAACCCAGAAGA---A 515
||||||||||||||||||||| || |||||||||||||||| |||||||||||||| |
Sbjct 910 GCAAGAATGCCTACTGATGCTTCTCCTAACATCATTCGTGGTTATAACCCAGAAGACTTA 969
Query 516 --A------CT------AG---C----CTTCGTTGATTTA-TATAGTATA-GTACCTGAC 552
| || || | |||||||| |||| ||||||| | ||| |||||
Sbjct 970 TCAGTTGAGCTTCTTTTAGAAACTAGTCTTCGTTGTTTTAGTATAGTAAACGTATCTGAC 1029
Query 553 ATTTTTCATGGGTTTGTGTTG---ATTCCAATTGTTGCAGTCGCAGGTGGCCATCCTCTG 609
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1030 ATTTTTCATGGGTTTGTGTTGTTGATTCCAATTGTTGCAGTCGCAGGTGGCCATCCTCTT 1089
Query 610 GCTCATCTTCGTGGACTTAA-CCGAGAAGGTTGCCGTGGCACTGACCCTTTTGATCCAGC 668
|||||||||||||||||||| || ||||||||| ||||||||||||||||||||||| ||
Sbjct 1090 GCTCATCTTCGTGGACTTAATCC-AGAAGGTTGTCGTGGCACTGACCCTTTTGATCCGGC 1148
Query 669 ATTCACTGGTCCGACCATACTACCACACCCGTCAGTGTTGGAGGGATCCACCAGTGCTTA 728
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1149 GTTCACTGGTCCGACCATACGACCACACCCGTCAGTGTTGGAGGGATCCACGAGTGCTTA 1208
Query 729 CGAGACAAAGCAGCTCTCAAACGGAGGTCTGTATCTGCGTATTGACATGCCTGGTGTCCC 788
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1209 CGAGACAAAGCAGCTCTCAAACGGTGGTCTGTATCTGCGAATTGACATGCCTGGTGTCCC 1268
Query 789 TAGCGGCAGATTCATGGTGGCAGTGGACGGCGACGGTGTCGTCACCATCATGGGACGAGC 848
||||| | | ||||| ||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1269 TAGCGACGGCTTCATTGTGGCAGTGGACGGCAATGGTGTCGTCACCATCATGGGACGAGC 1328
Query 849 TCCTGCGACCATGCACGA-TACGAATGGGTATTACACTATGAACAATCCGTACCAAGCGA 907
||||||||| |||||||| | | ||||| | |||| ||||||||||||||||||||||||
Sbjct 1329 TCCTGCGACTATGCACGACT-CAAATGGTTTTTACGCTATGAACAATCCGTACCAAGCGA 1387
Query 908 ACGGACCAAAAGGGTTTACTGAGTTCAAGTATCTGGAAGAAACCCATGATCTGTTCGTGA 967
||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1388 ACGGACCAAAAGGGTTTGCTGAGTTCAAGTATCTGGAAGATACCCATGATCTATTCGTGA 1447
Query 968 GGCTTGATTTCCCAGGAGTCAAGAAAGAGAA-G-GGG-TTTTATGCAATAAACAACCAGT 1024
|||||||||| || |||||||||||||||| | ||| ||||||||||||||||||||||
Sbjct 1448 GGCTTGATTTGCCTGGAGTCAAGAAAGAGACTGTGGGGTTTTATGCAATAAACAACCAGT 1507
Query 1025 TTTTAGCAACTGGACCAAAAGGGTTCATGGAGTTCAAGATGCTGGAGAACGAAGATATGT 1084
|| ||||| ||| ||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1508 TTCAAGCAAATGGGCCAAAAGGGTTCATGGAGTTCAAAATGTTGGAGAACGAAGATATGT 1567
Query 1085 TCGTGAGGATTGATTTTCCCGGCGTTCCAAAAGATGGTGTGAGGGTTTTTCTTGACCAGT 1144
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1568 ACGTTCGGATTGATTTTCCCGGCGTTCCAAGAGATGGTGTGAGGGTTTTTCTTGACCAGT 1627
Query 1145 CCAAGAAAGCTGTTTGTATCTTCGCCGAAGCACCAAAGGAACACAAATACGACTACTCTG 1204
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1628 CGAAGAAAGCTGTTTGTATCTTCGCCGACGCACCAAAGGAACACAAATACGACTACTCTG 1687
Query 1205 AACGGAACTACGGTACCAGCACCGGACTTGTCTGCAAATGCTGTGAAGTCTCCGGCTTCA 1264
||||||||||||||||| ||||||||| |||||||||||||||||| ||||||| ||||
Sbjct 1688 AACGGAACTACGGTACCTCCACCGGACTCGTCTGCAAATGCTGTGAAATCTCCGGATTCA 1747
Query 1265 CTTCTCT-CATGTGC-GATGGTGTTCTTAGGCTTATTCTCACCAAGTCCAACATCACTCC 1322
|||| || ||||| | |||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1748 CTTC-CTTCATGT-CTGATGGTGTTCTTAGGCTTCTCCTCACCAAGTCCAACATCACTCC 1805
Query 1323 ACAACGCTCCTCCTGCATCTCGTTTCTTGCTGGCCCAGATTTCAGAGAAGATCTCCGTGG 1382
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1806 ACAACGCTCCTCCTGCATCTCGTTTCTTGCTGGCCCAGATTTCAGAGAAGATCTGCGTGG 1865
Query 1383 CGATGGTCCTCACAAATTTCCCCATGGCACGGATCCTAATGCAGACCCGAAGTTAACTGG 1442
| | ||||||||||||||||||||||||||||||||||||| | || ||| ||||| ||
Sbjct 1866 CAACGGTCCTCACAAATTTCCCCATGGCACGGATCCTAATG-AT-CC-GAAATTAACGGG 1922
Query 1443 TCGGATATTGATGCCACACCCATGTGTGAACTACGGATCGGAGATGGCTTATGAGTCCAA 1502
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1923 TCGGATATTGATGCCACACCCATGTGTGAACTATGGATCAGAGATGGCTTATGAGTCCAA 1982
Query 1503 GCAGCTTCAAAACGGTGGTCTATACGTGCGTGTAGACATGCCAGGCGTTCCTAAAGAGAA 1562
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1983 GCAGCTTCAAAACGGTGGTCTATACGTGCGTGTAGACATGCCAGGCGTTCCCAAAGAGAA 2042
Query 1563 CTTCACTGTCGCAGTCATGAATAGGAGAGTGAAGGTGGCTGGTGAAGCTCCTGCCGTTAG 1622
|||||||||||||||||||||| ||||||||| |||| | ||||||||||||||| ||||
Sbjct 2043 CTTCACTGTCGCAGTCATGAATGGGAGAGTGAGGGTGACCGGTGAAGCTCCTGCCATTAG 2102
Query 1623 CCACGACTCAAGTGGACGTTTCTACTCTGGTGACGTTGCTATGCTCTCCACACCTTTCGA 1682
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 2103 CCACGACTCAAGTGGACGTTTCTACACTGGTGACGTTGCTATGCTCTCCACTCCTTTCGA 2162
Query 1683 CCTTCCCGTCCGTAAGATCAAGACCATTGCCAAGAACGGTGTGATTCGTTTGATCATCCC 1742
| ||||| ||||||||||||||| |||||| ||||||||||| |||||| ||||||||||
Sbjct 2163 CATTCCCATCCGTAAGATCAAGATCATTGCTAAGAACGGTGTCATTCGTCTGATCATCCC 2222
Query 1743 TCCTGTTTGA 1752
||| ||||||
Sbjct 2223 TCCCGTTTGA 2232
Score = 189 bits (102), Expect = 8e-47
Identities = 118/126 (94%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 872 ATGGGTATTACACTATGAACAATCCGTACCAAGCGAACGGACCAAAAGGGTTTACTGAGT 931
||||||||||| ||| |||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 503 ATGGGTATTACGCTACAAACAATCCGTACCAAGTGAACGGACCAAAAGGTTTTACTGAGT 562
Query 932 TCAAGTATCTGGAAGAAACCCATGATCTGTTCGTGAGGCTTGATTTCCCAGGAGTCAAGA 991
|||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||
Sbjct 563 TCAAGTATCTGGAAGAGACCCATGATCTGTTCGTGAGGCTTGATTTCCCAGGAATCCAGA 622
Query 992 AAGAGA 997
||||||
Sbjct 623 AAGAGA 628
> AT4G16560.1 | Symbols: | HSP20-like chaperone | chr4:9324746-9328628
REVERSE LENGTH=1599
Length=1599
Score = 1206 bits (653), Expect = 0.0
Identities = 870/967 (90%), Gaps = 46/967 (5%)
Strand=Plus/Plus
Query 1 ATGCCTATCACGCACATCGCTCCGGCGCCTCACCCTCGCGATGGGTATTACTCTACGAAC 60
||| ||||| ||||||||||||||| |||||||||||||||||||||||| |||| |||
Sbjct 1 ATGTCTATCCCGCACATCGCTCCGGTACCTCACCCTCGCGATGGGTATTACGCTACAAAC 60
Query 61 AATCCGTACCAAGTGAACGGACCAAAAGGTTTTACTGAGTTCAAGTATCTGGAAGAGACC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATCCGTACCAAGTGAACGGACCAAAAGGTTTTACTGAGTTCAAGTATCTGGAAGAGACC 120
Query 121 CATGATCTGTTCGTGAGGCTTGATTTCCCAGGAATCAAGAAAGAGAGTGTGATTATCCTT 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 121 CATGATCTGTTCGTGAGGCTTGATTTCCCAGGAATCCAGAAAGAGAGTGTGATAATCCTT 180
Query 181 CTCGAACCATTGAAAAAAGCTGTTATTGTGACCGGAGACGCACCTAAAGAGAGCAAACAC 240
|||||||||| ||| |||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 181 CTCGAACCATCGAAGAAAGCTGTCATTGTGACCGGAGAAGCACCCAAAGAGAGCAAACAC 240
Query 241 GATTCTTCTCACCGCAAGTATGGAACCGCCACGGGACTAATCTGTGACTGCTGTGAAATC 300
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 GATTCTTCTCACCGTAAGTATGGAACCGCCACGGGTCTAATCTGTGACTGCTGTGAAATC 300
Query 301 AGTAACATTCAGTGTTTTGTTGGTGATGGTGTCGTTAGACTCATCCTCTCCAAGAAGAAG 360
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 301 AGTAACATTCAGTGTTTTGTTGGTGATGGTGTCGTTAGACTTATCCTCTCCAAGCAGAAG 360
Query 361 ATCAATCTTCGCGTTCCTAATTTCTGTTCTTGTAAGATCATTAATCTTCAAA-TGttttt 419
||||||||||| ||||||| ||||||||| |||||||||| ||||||||||| ||||||
Sbjct 361 ATCAATCTTCGTGTTCCTATTTTCTGTTCCTGTAAGATCACTAATCTTCAAAATGTTTTG 420
Query 420 tttcttctcttttttttttttgtcttttttGTCGGAGGTGCAAGAATGCCTACTGATGCT 479
||| || | | | || |||||||| | | |||||||||||||||||||||||||
Sbjct 421 TTT-TT-T-TGTCTTATTTTTGTC------G--G-AGGTGCAAGAATGCCTACTGATGCT 468
Query 480 CCTGCTAACATCATTCGTGGCTATAACCCAGAAGA---A--A------CT------AG-- 520
|| |||||||||||||||| |||||||||||||| | | || ||
Sbjct 469 TCTCCTAACATCATTCGTGGTTATAACCCAGAAGACTTATCAGTTGAGCTTCTTTTAGAA 528
Query 521 -C----CTTCGTTGATTTA-TATAGTATA-GTACCTGACATTTTTCATGGGTTTGTGTTG 573
| |||||||| |||| ||||||| | ||| ||||||||||||||||||||||||||
Sbjct 529 ACTAGTCTTCGTTGTTTTAGTATAGTAAACGTATCTGACATTTTTCATGGGTTTGTGTTG 588
Query 574 ---ATTCCAATTGTTGCAGTCGCAGGTGGCCATCCTCTGGCTCATCTTCGTGGACTTAA- 629
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 589 TTGATTCCAATTGTTGCAGTCGCAGGTGGCCATCCTCTTGCTCATCTTCGTGGACTTAAT 648
Query 630 CCGAGAAGGTTGCCGTGGCACTGACCCTTTTGATCCAGCATTCACTGGTCCGACCATACT 689
|| ||||||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 649 CC-AGAAGGTTGTCGTGGCACTGACCCTTTTGATCCGGCGTTCACTGGTCCGACCATACG 707
Query 690 ACCACACCCGTCAGTGTTGGAGGGATCCACCAGTGCTTACGAGACAAAGCAGCTCTCAAA 749
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 708 ACCACACCCGTCAGTGTTGGAGGGATCCACGAGTGCTTACGAGACAAAGCAGCTCTCAAA 767
Query 750 CGGAGGTCTGTATCTGCGTATTGACATGCCTGGTGTCCCTAGCGGCAGATTCATGGTGGC 809
||| |||||||||||||| ||||||||||||||||||||||||| | | ||||| |||||
Sbjct 768 CGGTGGTCTGTATCTGCGAATTGACATGCCTGGTGTCCCTAGCGACGGCTTCATTGTGGC 827
Query 810 AGTGGACGGCGACGGTGTCGTCACCATCATGGGACGAGCTCCTGCGACCATGCACGA-TA 868
|||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 828 AGTGGACGGCAATGGTGTCGTCACCATCATGGGACGAGCTCCTGCGACTATGCACGACT- 886
Query 869 CGAATGGGTATTACACTATGAACAATCCGTACCAAGCGAACGGACCAAAAGGGTTTACTG 928
| ||||| | |||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 887 CAAATGGTTTTTACGCTATGAACAATCCGTACCAAGCGAACGGACCAAAAGGGTTTGCTG 946
Query 929 AGTTCAA 935
|||||||
Sbjct 947 AGTTCAA 953
Score = 344 bits (186), Expect = 2e-93
Identities = 242/269 (90%), Gaps = 4/269 (1%)
Strand=Plus/Plus
Query 610 GCTCATCTTCGTGGACTTAACCGAGAAGGTTGCCGTGGCACTGACCCTTTTGATCCAGCA 669
|||||| |||||||||||| || | ||||| ||||| ||||||||||| |||||||||
Sbjct 1225 GCTCATTTTCGTGGACTTATCCCAAAAGGTCGCCGTTGCACTGACCCTGGTGATCCAGCG 1284
Query 670 TTCACTGGTCCGACCATACTACCACACCCGTCAGTGTTGGAGGGATCCACCAGTG-CTTA 728
|||||||||||| | ||||||||||||||||||||||||||||| ||| | || ||||
Sbjct 1285 TTCACTGGTCCGGTCGTACTACCACACCCGTCAGTGTTGGAGGGACCCATGA-TGCCTTA 1343
Query 729 CGAGACAAAGCAGCTCTCAAACGGAGGTCTGTATCTGCGTATTGACATGCCTGGTGTCCC 788
|||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||
Sbjct 1344 CGAGACAAAGCAGCTCTCAAACGGTGGTCTGTATATGCGTGTTGACATGCCTGGTGTCCC 1403
Query 789 TAGCG-GCAGATTCATGGTGGCAGTGGACGGCGACGGTGTCGTCACCATCATGGGACGAG 847
||||| | || ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1404 TAGCGAGAAG-TTCATGGTGGCAGTGGACGGCGATGGTGTCGTCACCATCATGGGACGAG 1462
Query 848 CTCCTGCGACCATGCACGATACGAATGGG 876
|||||| |||||||||||| |||| ||||
Sbjct 1463 CTCCTGTGACCATGCACGACACGAGTGGG 1491
Score = 189 bits (102), Expect = 8e-47
Identities = 118/126 (94%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 872 ATGGGTATTACACTATGAACAATCCGTACCAAGCGAACGGACCAAAAGGGTTTACTGAGT 931
||||||||||| ||| |||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 41 ATGGGTATTACGCTACAAACAATCCGTACCAAGTGAACGGACCAAAAGGTTTTACTGAGT 100
Query 932 TCAAGTATCTGGAAGAAACCCATGATCTGTTCGTGAGGCTTGATTTCCCAGGAGTCAAGA 991
|||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||
Sbjct 101 TCAAGTATCTGGAAGAGACCCATGATCTGTTCGTGAGGCTTGATTTCCCAGGAATCCAGA 160
Query 992 AAGAGA 997
||||||
Sbjct 161 AAGAGA 166
Score = 97.1 bits (52), Expect = 5e-19
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 316 TTTGTTGGTGATGGTGTCGTTAGACTCATCCTCTCCAAGAAGAAGATCAATCTTCGCGTT 375
||||||| |||||||| |||||||||||||||||||||||||||||| ||| || | |
Sbjct 1081 TTTGTTGAAGATGGTGTTGTTAGACTCATCCTCTCCAAGAAGAAGATCTATCCTCATGCT 1140
Query 376 CCTAATTTCTGTTCTT 391
||||||||||||||||
Sbjct 1141 CCTAATTTCTGTTCTT 1156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86646140670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5