BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890595
Length=1419
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16490.1 | Symbols: | ARM repeat superfamily protein | chr4... 2266 0.0
> AT4G16490.1 | Symbols: | ARM repeat superfamily protein | chr4:9293543-9295625
REVERSE LENGTH=1862
Length=1862
Score = 2266 bits (1227), Expect = 0.0
Identities = 1357/1421 (95%), Gaps = 4/1421 (0%)
Strand=Plus/Plus
Query 1 ATGGTTTCGGTGGAGGAACCGTTATCTCATTCTAATTCCAATCGCTTTCCGTTAACAACC 60
||||| |||||||||||||| ||||||||||| ||||||| |||||||||||||||||||
Sbjct 96 ATGGTATCGGTGGAGGAACCTTTATCTCATTCCAATTCCACTCGCTTTCCGTTAACAACC 155
Query 61 GATTTCTACGGTTCATCGTCGCCGTCGGCGGCGAGGTTACACCGTCAAGCTGGCCGATCG 120
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 156 GATTTCTACGGTTCATCATCGCCGTCGGCGGCGAGGTTACACCGTCAAGCTGGCCGGTCG 215
Query 121 ATGAGGACAGTGAGATCTAACTTCTACCAAAGCGGTGATCAATCTTGCTCATTCGTCGGC 180
||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 216 ATGAGAACAGTGAGATCTAACTTCTATCAAAGCGGAGATCAATCTTGCTCATTCGTCGGC 275
Query 181 TCTATCGGCGATAAATCGGAGTATGCGTCGGAGTTTCTGTCAGATTCCGTCATCGACATG 240
|| |||||||||||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 276 TCAATCGGCGATAAATCAGAGTATGCGTCGGAGTTTCTCTCGGATTCCGTCATCGACATG 335
Query 241 AGACTCGGCGAGCTTGCTTTGAAAAACAGTAATTCTCTCAATTCAAACGCTTCCTCAATG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 AGACTCGGCGAGCTTGCTTTGAAAAACAGTAATTCTCTCAATTCAAACGCTTCCTCAATG 395
Query 301 AAAGAGGAAGCGTTTCTTGACATTTCTCAGGCGTTTAGTGATTTTTCCGCTTGTAGTAGT 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 AAAGAGGAAGCGTTTCTCGACATTTCTCAGGCGTTTAGTGATTTTTCCGCTTGTAGTAGT 455
Query 361 GATATCTCCGGCGAGTTACAGCGTCTAGCTTGCTTGCCGTCGCCGGATTCTGAGAGAAAT 420
|||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||
Sbjct 456 GATATCTCCGGCGAGTTACAGCGTCTTGCTTGCTTGCCGTCGCCGGAGGCTGATAGAAAT 515
Query 421 GAGAGCGGCGGAGATAACGAAGCGGCGCAGGATCCGGAATTAGAGAGAGAGCCTTGTCTA 480
||||||||||||||||||||||||| ||| ||||| || |||||||||||||||||||||
Sbjct 516 GAGAGCGGCGGAGATAACGAAGCGGAGCATGATCCAGAGTTAGAGAGAGAGCCTTGTCTA 575
Query 481 GGGTTTCTACAGAGGGAAAATTTCTCTACGGAGATTATCGAGTGTATTTCGCCGGAAGAT 540
|||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 576 GGGTTTCTACAGAGAGAAAACTTCTCTACAGAGATTATCGAGTGTATTTCGCCGGAAGAT 635
Query 541 CTGCAACCAACTGTGAAACTCTGTATTGACGGACTTCGCTC-TACTTCGGTGGCGATAAA 599
||||| |||||||||||||| || || ||||||||||| || | ||||||||||||||||
Sbjct 636 CTGCAGCCAACTGTGAAACTATGCATCGACGGACTTCGTTCCT-CTTCGGTGGCGATAAA 694
Query 600 GCGATCTGCTGCGGCGAAGCTGCGGCTACTGGCGAAGAATCGAGCGGATAATCGTGTGTT 659
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 695 GCGATCTGCTGCGGCGAAGCTACGGCTATTGGCGAAGAATCGAGCGGATAATCGTGTGTT 754
Query 660 GATTGGGGAATCTGGAGCTATTCAAGCTTTGATTCCACTTCTTCGTTGTAACGATCCATG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 GATTGGGGAATCTGGAGCTATTCAAGCTTTGATTCCACTTCTTCGTTGTAACGATCCATG 814
Query 720 GACGCAAGAGCACGCAGTTACAGCTCTCTTGAACCTCTCTTTACACGACCAGAACAAAGC 779
||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 815 GACGCAAGAGCACGCAGTTACAGCTCTGTTAAACCTCTCGTTACACGACCAGAACAAAGC 874
Query 780 TGTAATCGCTGCAGGAGGAGCGATTAAATCACTAGTGTGGGTTCTCAAAACTGGGACGGA 839
||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 875 TGTAATCGCCGCAGGAGGAGCGATTAAATCACTAGTGTGGGTACTCAAAACGGGGACGGA 934
Query 840 GACTTCAAAGCAGAACGCTGCATGCGCGTTGCTTAGTTTGGCGCTATTGGAGGAGAACAA 899
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 935 GACTTCAAAGCAGAACGCTGCATGTGCTTTGCTTAGTTTGGCGCTATTGGAGGAGAACAA 994
Query 900 AGGCTCAATCGGAGCCTGTGGTGCGATTCCGCCGCTGGTTTCTCTTTTGTTGAACGGATC 959
||||||||||||||| || ||||| ||||||||||||||||||||| |||||||||||||
Sbjct 995 AGGCTCAATCGGAGCTTGCGGTGCTATTCCGCCGCTGGTTTCTCTTCTGTTGAACGGATC 1054
Query 960 TTGCAGAGGCAAGAAGGATGC-TCTGACGACGCTTTACAAGCTGTGTACGCTTCAGCAAA 1018
|||||| || ||||||||||| | |||||||||| |||||||||||||||||||||||||
Sbjct 1055 TTGCAGGGGAAAGAAGGATGCGT-TGACGACGCTCTACAAGCTGTGTACGCTTCAGCAAA 1113
Query 1019 ACAAGGAGAGAGCGGTCACTGCTGGAGCGGTGAAGCCGTTGGTGGACCTTGTGGCTGAGG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 ACAAGGAGAGAGCGGTCACTGCTGGAGCGGTGAAGCCGTTGGTGGACCTTGTGGCTGAGG 1173
Query 1079 AAGGGACTGGAATGGCGGAGAAAGCGATGGTGGTTCTGAGTAGCCTGGCAGCGATTGACG 1138
|||||||||| |||||||||||||| |||||||||||||||||||| |||||||| || |
Sbjct 1174 AAGGGACTGGTATGGCGGAGAAAGCTATGGTGGTTCTGAGTAGCCTTGCAGCGATAGATG 1233
Query 1139 AAGGTAAAGAGGCTATTGTTGAGGAAGGAGGGATCGCAGCGCTTGTTGAGGCCATCGAGG 1198
| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 ATGGCAAAGAGGCTATTGTCGAGGAAGGAGGGATCGCAGCGCTTGTTGAGGCCATCGAGG 1293
Query 1199 ATGGATCTGTGAAAGGGAAAGAATTTGCGATCTTGACACTGTTGCAGCTTTGTTCTGATA 1258
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1294 ATGGATCTGTGAAAGGGAAAGAATTTGCGATCTTGACGCTGTTGCAGCTTTGTTCTGATA 1353
Query 1259 GCGTTAGAAACCGTGGGTTGCTTGTGAGGGAAGGCGCGATTCCTCCGCTTGTGGGTCTCT 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1354 GCGTTAGAAACCGTGGGTTGCTTGTGAGGGAAGGCGCGATTCCTCCGCTTGTGGGCCTCT 1413
Query 1319 CTCAGAGCGGCTCCGTCAGTGTTAGAGCTAAGCGCAAGGCAGAAAGACTTCTGGGGTATC 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1414 CTCAGAGCGGCTCCGTCAGTGTTAGAGCTAAGCGCAAGGCAGAAAGACTTCTGGGGTATC 1473
Query 1379 TACGGGAGCCAAGGAAGGAGGGAAGTTCATCAAGCCCTTGA 1419
| ||||||||||||||||||| ||||||||||||||| |||
Sbjct 1474 TTCGGGAGCCAAGGAAGGAGGCAAGTTCATCAAGCCCATGA 1514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69929359185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5