BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890597
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16470.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1548 0.0
> AT4G16470.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:9287862-9289582 REVERSE LENGTH=1547
Length=1547
Score = 1548 bits (838), Expect = 0.0
Identities = 943/994 (95%), Gaps = 6/994 (1%)
Strand=Plus/Plus
Query 465 AGATTTGATCCCGTGGAATGCGATGATATCTGGGTATGTGCAAAAGGGTCTT-GAACAAG 523
||||||||| ||||||||||| ||||||||||||||||||||||| ||| || || ||||
Sbjct 557 AGATTTGATACCGTGGAATGCAATGATATCTGGGTATGTGCAAAAAGGT-TTAGAGCAAG 615
Query 524 ATGGGCTTTATATTTATTATGATATGAGACAGAACGGAATAGTTCCTGATCAGTATACTT 583
| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 616 AAGGGCTTTTTATTTATTATGATATGAGACAGAACAGAATAGTTCCTGATCAGTATACAT 675
Query 584 TTGCTTCAGTGTTTAGAGTTTGTTCTGCGTTAGCATC-GTTGGAACACGGTAAGAGAGCT 642
|||||||||||||||||| |||||||||||||| ||| ||||||||| || |||||||||
Sbjct 676 TTGCTTCAGTGTTTAGAGCTTGTTCTGCGTTAG-ATCGGTTGGAACATGGAAAGAGAGCT 734
Query 643 CACGCTGTGATGATAAAGAGACATATTAAGTCGAACATTATAGTTGATAGTGCCCTTGTT 702
|||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||
Sbjct 735 CACGCTGTGATGATAAAGCGGTGTATTAAGTCGAACATTATAGTTGATAGTGCTCTTGTT 794
Query 703 GATATGTACTTTAAATGCAGCAGCTTCTCTGATGGCCACAAAGTATTTGATCAATTGTCC 762
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 795 GATATGTACTTTAAATGCAGTAGCTTCTCTGATGGCCACAGAGTATTTGATCAATTGTCC 854
Query 763 ACTAGAAACGTTG-TTACGTGGACCTCATTGATGTCTGGCTATGGATATCATGGAAAAGT 821
|||||||| | || ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 855 ACTAGAAATG-TGATTACGTGGACCTCATTGATATCTGGCTATGGATATCATGGAAAAGT 913
Query 822 TTCAGAGGTGTTAAAATGCTTTGAGAAGATGAAGGAAGAAGGTTGTAGACCAAATCCGGT 881
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 914 TTCAGAGGTGTTAAAATGCTTTGAAAAGATGAAGGAAGAAGGTTGTAGACCAAATCCGGT 973
Query 882 TACATTTTTGGTGGTTCTCACTGCGTGTAACCATGGAGGTTTAGTTGATAAAGGTTGGGA 941
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 TACTTTTTTGGTGGTTCTCACTGCGTGTAACCATGGAGGTTTAGTTGATAAAGGTTGGGA 1033
Query 942 GCATTTCAATTCTATGAAGAGAGATTACGGGATTGAACCTGAGGGACAACACTATGCAGC 1001
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1034 GCATTTCTATTCTATGAAGAGAGATTACGGGATTGAACCTGAGGGACAACACTATGCTGC 1093
Query 1002 TATGGTTGATACGTTAGGGCGTGCTGGTAGGCTACAAGAAGCGTACGAATTTGTAATGAA 1061
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1094 TATGGTTGATACGTTAGGGCGTGCTGGTAGGTTACAAGAAGCGTATGAATTTGTAATGAA 1153
Query 1062 GTCACCATGCAAGGAGCATGCTCCGGTATGGGGTTCTTTACTTGGGGCTTGCAGGATTCA 1121
||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||
Sbjct 1154 GTCACCATGCAAGGAGCATCCCCCAGTATGGGGTTCTTTACTTGGGGCTTGCAGGATTCA 1213
Query 1122 TGGGAATGTGAAACTGCTAGAACTCGCAGCTACAAAATTTTTGGAGTTGGATCCAACGAA 1181
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1214 TGGGAATGTGAAACTGCTAGAACTCGCAGCTACAAAATTTTTAGAGTTGGATCCAACAAA 1273
Query 1182 TGGGGGGAATTACGTGGTGTTTGCCAATGGATACGCGAGTTGTGGATTCCGTGATGCTGC 1241
||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1274 TGGAGGGAATTACGTTGTGTTTGCCAATGGATACGCGAGTTGTGGATTACGTGAAGCTGC 1333
Query 1242 TTCAAAGGTTAGGAGGAGGATGGAGAACGCAGGAGTTAAAAAAGATCCCGGGTATAGCCA 1301
|||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1334 CTCAAAGGTTAGGAGGAAGATGGAGAATGCAGGAGTGAAAAAAGATCCCGGGTATAGCCA 1393
Query 1302 GATCGAATTACAAGGGGAAGTTCATAGATTCATGAAGGATGATACGTCTCACAGACTCTC 1361
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1394 GATAGAATTACAAGGGGAAGTTCATAGATTCATGAAGGATGATACGTCTCACAGACTCTC 1453
Query 1362 AGTAAAGATATACAAGAAGGTCCACGAGATGACTTCATTCTTTATGGATATTGACTACTA 1421
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1454 TGAAAAGATATACAAGAAGGTCCATGAGATGACTTCATTCTTTATGGATATTGACTACTA 1513
Query 1422 TCCAGATGACTTAGACTCTTGCTGTCCTGTTTGA 1455
|||||||| |||||||||| ||||||||||||||
Sbjct 1514 TCCAGATGGCTTAGACTCTAGCTGTCCTGTTTGA 1547
Score = 560 bits (303), Expect = 1e-158
Identities = 414/468 (88%), Gaps = 6/468 (1%)
Strand=Plus/Plus
Query 1 ATGAAAACGTTAATATCTTCTTCTCTGTCTCACAAATCCCACTCTCAGATC-CTCTGCTT 59
|||||||||||||| ||||||||||| |||||||||||||| | | || | | |||||
Sbjct 42 ATGAAAACGTTAATCTCTTCTTCTCTTTCTCACAAATCCCAATGTTTGA-CTATTTGCTT 100
Query 60 CTCTCTGAATAAACTTGCCATGATTTACTCTCA-GAAGTTGTTACAAACAGAGGCCTCTC 118
| |||||||| ||||| ||| |||||| || | ||| ||||||||||| ||||
Sbjct 101 CAAGCTGAATAAGCTTGCAATGGTTTACT-ACACTCGGGAGTTCCAAACAGAGGCGTCTC 159
Query 119 AGTCGTCGGCTTCCGGTCCTATGTTTTCCGGCAATGCGACGGCGATCCTACGCCGGATGC 178
|| |||||||||||||| ||||||| ||||| ||||||||| ||||||||||||||||||
Sbjct 160 AGACGTCGGCTTCCGGTTCTATGTTCTCCGGAAATGCGACGACGATCCTACGCCGGATGC 219
Query 179 TAGCGGAGAGGAGAATTGGCAGCTTTCAGGTGGAGAATCAGA-GAAAGAAAGAGAAGTTA 237
| || |||| ||||||||| || ||||||||||||||||||| |||| | ||||||| ||
Sbjct 220 TTGCAGAGAAGAGAATTGGAAGGTTTCAGGTGGAGAATCAGAGGAAA-ACAGAGAAGCTA 278
Query 238 GATAAGACATTAAAGGGTCTGTGTGTCACTGGGAGATTGAAAGAAGCTGTTGGGTTGTTA 297
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 279 GATAAGACATTAAAGGGTCTATGTGTTACAGGGAGATTGAAAGAAGCTGTTGGGTTGTTA 338
Query 298 TGGCGTAGCGGGTTGCAAGTCGAGCCTGAGACTTATGCTGTGCTGTTGCAGGAATGTAAA 357
||| ||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 339 TGGAGTAGCGGATTGCAAGTAGAGCCTGAGACTTATGCTGTACTGTTGCAGGAATGTAAA 398
Query 358 CAAAGGAAGGAATATACAAAAGGGAAACGGATTCATGCTCAGATGATTGTTGTAGGATAT 417
||||||||||| ||||||||||||||||| || |||||||||||| ||||||| |||| |
Sbjct 399 CAAAGGAAGGAGTATACAAAAGGGAAACGTATACATGCTCAGATGTTTGTTGTTGGATTT 458
Query 418 GCTCCCAATGAGTATTTGAAAGTTAAGTTGTTGATACTTTACGCCTTA 465
|||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 GCTCTCAATGAGTATTTGAAAGTTAAGTTGTTGATACTTTACGCCTTA 506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71736578805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5