BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890603
Length=1425
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16440.1 | Symbols: | ferredoxin hydrogenases | chr4:926909... 2383 0.0
> AT4G16440.1 | Symbols: | ferredoxin hydrogenases | chr4:9269094-9271669
REVERSE LENGTH=1753
Length=1753
Score = 2383 bits (1290), Expect = 0.0
Identities = 1380/1425 (97%), Gaps = 0/1425 (0%)
Strand=Plus/Plus
Query 1 ATGTCGGAGAAGTTTTCACCGGCTTTGAGGCTTGGAGATCTCAACGATTTCATTGCTCCG 60
||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 160 ATGTCAGAGAAGTTTTCACCGACTTTGAGGCTCGGAGATCTCAACGATTTCATTGCTCCG 219
Query 61 TCTCAAGCTTGTGTCATATCTCTTAAGGATTCAAAACCCATCGTCAAGAAGTCTGATCGA 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 220 TCTCAAGCTTGTGTCATATCTCTTAAGGACTCAAAACCCATCGTCAAGAAGTCTGATCGA 279
Query 121 CCCCAGGTTGTGATTGCCCCAAAACAGCAGCTTGAACCGGTCAAAATTTCTCTCAAGGAT 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 280 CCCCAGGTTGTGATTGCCCCAAAACAGCAGCTTGAACCGGTTAAAATTTCTCTCAAGGAT 339
Query 181 TGCTTGGCTTGCAGTGGATGCATCACATCAGCTGAGACAGTTATGCTTGAGAAGCAAAGC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 TGCTTGGCTTGCAGTGGATGCATCACATCAGCTGAGACAGTTATGCTTGAGAAGCAAAGC 399
Query 241 TTAGACGAGTTTCTCTCTGCCCTTAGCAAAGGCAAGGACGTGATTGTGTCCATTTCGCCG 300
|||||||||||||||||||| ||||||||||||||||||||| |||||||| |||| ||
Sbjct 400 TTAGACGAGTTTCTCTCTGCTCTTAGCAAAGGCAAGGACGTGGTTGTGTCCGTTTCTCCA 459
Query 301 CAGTCGAGAGCTTCCCTTGCGGTTCACTATGAGATCTCTCCTCTTCAGGTTTTCAAGAAG 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 460 CAGTCGAGAGCTTCCCTTGCGGTTCACTATGACATCTCTCCTCTTCAGGTTTTCAAGAAG 519
Query 361 CTAACTACGTTTTTGAAGTCTTTCGGAGTTAAAGCTGTGTTTGATACAAGCTGCAGTAGA 420
|| |||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||
Sbjct 520 CTTACTACGTTTTTGAAGTCTCTGGGAGTTAAAGCTGTGTTTGATACTAGCTGCAGTAGA 579
Query 421 GACTTGGTACTTATTGAAGCTTGTAATGAGTTTGTGAGCCGTTACAAGCAAGCTAATTCT 480
|| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 580 GATTTGGTACTTATTGAATCTTGTAATGAGTTTGTGAGCCGTTATAAGCAAGCTAATTCT 639
Query 481 GATGATGGTGAAAATTCTCAATCCCCTCTCCCTGTGCTTTCCTCTGCCTGTCCTGGTTGG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 GATGATGGTGAAAATTCTCAATCCCCTCTCCCTGTGCTTTCCTCTGCCTGTCCTGGTTGG 699
Query 541 ATATGTTATGCTGAAAAGCAGCTTGGCTCATATGTTCTGCCGTATGTCTCCTCTGTTAAG 600
|| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 700 ATTTGTTATGCTGAAAAGCAGCTTGGCTCATATGTTCTGCCGTATGTGTCTTCTGTTAAG 759
Query 601 AGTCCTCAGCAAGCTATTGGAGCTGCAATCAAACACCATCTGTGTCAAGCATTAGGACTC 660
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 760 AGTCCTCAGCAAGCTATTGGAGCTGCGATCAAACACCATCTGTGTCAAGCATTAGGACTC 819
Query 661 AGGCTGCAGGAGGTGTACCATGTGACTGTGATGCCCTGTTATGATAAGAAGCTCGAGGCA 720
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 820 AGGCTGCATGAGGTGTACCATGTGACTGTGATGCCCTGTTATGATAAGAAACTCGAGGCA 879
Query 721 GCAAGAGATGATTTTGTCTTTGAAGATGGAGCACAAGATAATGGAGGCCTCAAGCTGACA 780
||||||||||||||||||||||| |||||| ||||||||||||||| ||| |||||||||
Sbjct 880 GCAAGAGATGATTTTGTCTTTGATGATGGAACACAAGATAATGGAGACCTTAAGCTGACA 939
Query 781 GAGGTTGATTCCGTGCTAACAACTGGTGAAATCTTGGATTTAATAAAGTTGAAAGGAGTT 840
|| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 940 GAAGTTGATTCCGTGCTAACAACGGGTGAAATCATGGATTTAATAAAGTTGAAAGGAGTT 999
Query 841 GACTTTAAAGATCTGGAGGAATCTCCACTCGACAGAATGCTGACGAATGTTACTGAGGAA 900
|||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 1000 GACTTTAAAGATTTGGAGGAATCTCCACTTGACAGAGTGCTGACGAATGTTACTGAGGAA 1059
Query 901 GGACATCTTTATGGTGTAGCTGGGAGTTCTGGGGGTTATGCAGAAACAATATTCAGACAT 960
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1060 GGAGATCTTTATGGTGTAGCTGGGAGTTCTGGTGGTTATGCAGAAACAATATTCAGACAT 1119
Query 961 GCGGCAAAAGCACTATTTGGACAAACTATTGAAGGTCCTCTGGAGTTTAAAACTCTCAGA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 GCGGCAAAAGCACTATTTGGACAAACTATTGAAGGTCCTCTGGAGTTTAAAACTCTCAGA 1179
Query 1021 AATTCTGATTTCCGTGAAGTAACTCTTCAATTGGAAGGTAAAACAGTGTTAAAATTTGCG 1080
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1180 AATTCTGATTTCCGTGAAGTGACTCTTCAATTGGAAGGTAAAACAGTGTTAAAATTTGCG 1239
Query 1081 CTGTGTTACGGTTTCCAGAACCTTCAGAATATTGTTCGGAGAGTGAAAACGCGCAAATGC 1140
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1240 CTGTGTTACGGTTTCCAGAACCTCCAGAATATTGTTCGGAGAGTGAAAACGCGCAAATGC 1299
Query 1141 GATTATCATTATGTAGAGATTATGGCGTGCCCTGCAGGTTGCCTAAATGGTGGTGGGCAG 1200
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 GATTATCAGTATGTAGAGATTATGGCGTGCCCTGCAGGTTGCCTAAATGGTGGTGGGCAG 1359
Query 1201 ATCAAGCCAAAGACAGGGCAGTCCCAGAAAGAACTGATCCACTCACTGGAAGCTACTTAT 1260
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 ATCAAGCCAAAGACAGGACAGTCCCAGAAAGAACTGATCCACTCACTGGAAGCTACTTAT 1419
Query 1261 ATGAATGATACTACTTTGAATACAGATCCATACCAGAATCCAACGGCCAAGAGATTATAC 1320
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1420 ATGAATGATACTACTTTGAATACAGATCCATACCAGAATCCAACGGCGAAGAGATTATTC 1479
Query 1321 GAGGAGTGGCTTAAAGAGCCTGGCTCCAACGAGGCGAAGAAGTACTTGCACACTCAGTAC 1380
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1480 GAGGAGTGGCTTAAAGAGCCTGGTTCCAACGAGGCGAAGAAGTACTTGCATACTCAGTAC 1539
Query 1381 CATCCGGTCGTGAAAAGTGTTACGTCGCAGCTCAACAATTGGTAG 1425
|||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1540 CATCCGGTCGTGAAAAGTGTTACGTCGCAGCTCAACAACTGGTAG 1584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70230562455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5