BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890633
Length=798
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16210.1 | Symbols: ECHIA, E-COAH-2 | enoyl-CoA hydratase/is... 1242 0.0
> AT4G16210.1 | Symbols: ECHIA, E-COAH-2 | enoyl-CoA hydratase/isomerase
A | chr4:9176673-9178048 REVERSE LENGTH=1059
Length=1059
Score = 1242 bits (672), Expect = 0.0
Identities = 757/799 (95%), Gaps = 2/799 (0%)
Strand=Plus/Plus
Query 1 ATGGATCAAACAATATCGGAATATCTCATCCAGGTGAAGAAGGAATCAGGCGGGATCGCC 60
|||||||||||| |||||||| ||||||| ||||||||||| ||||||||||||||||||
Sbjct 71 ATGGATCAAACAGTATCGGAAAATCTCATTCAGGTGAAGAAAGAATCAGGCGGGATCGCC 130
Query 61 ATCATCACAATCAACCGTCCGAAATCTCTCAATTCGCTCACGAGAGCGATGATGGTGGAT 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 131 GTCATCACAATCAACCGTCCGAAATCTCTCAATTCACTCACGAGAGCGATGATGGTTGAT 190
Query 121 CTCGCCAAGGCATTTAAGGATATGGACTCCGACGAATCGGTCCAGGTCGTGATTTTCACC 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 CTCGCCAAGGCATTCAAGGATATGGACTCCGACGAATCGGTCCAGGTCGTGATTTTCACC 250
Query 181 GGATCGGGTCGATCTTTTTGCTCTGGCGTTGATTTGACTGCGGCGGAGTCAGTTTTCAAG 240
||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 251 GGATCAGGTCGATCTTTCTGCTCTGGCGTTGATTTGACTGCGGCGGAGTCTGTTTTCAAA 310
Query 241 GGAGACGTGAAGGATCCGGAAACCGACCCGGTAATTCAGATGGAGCGGTTACGAAAACCG 300
|||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||
Sbjct 311 GGAGACGTGAAGGATCCGGAAACCGACCCGGTTGTGCAGATGGAGCGGTTACGTAAACCG 370
Query 301 ATCATCGGAGCTATTAACGGTTTCGCCATCACCGCTGGGTTCGAGCTAGCCTTGGCCTGT 360
||||||||||||||||||||||| ||||||||||| ||||| || || ||||||||||||
Sbjct 371 ATCATCGGAGCTATTAACGGTTTTGCCATCACCGCCGGGTTTGAACTCGCCTTGGCCTGT 430
Query 361 GATATTTTGGTCGCTTCTAGAGGAGCTAAGTTCATGGATACTCACGCCAGGTTTGGGATA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 GATATTTTGGTCGCTTCTAGAGGAGCTAAGTTCATGGATACTCACGCCAGGTTTGGGATA 490
Query 421 TTTCCTTCATGGGGTTTGTCTCAGAAGCTGTCGAGGATCATCGGAGCAAACAAAGCTCGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 TTTCCTTCATGGGGTTTGTCTCAGAAGCTGTCGAGGATCATCGGAGCAAACAAAGCTCGA 550
Query 481 GAAGTTTCTTTAACATCGCTGCCATTGACAGCTGACGTAGCTGGGAAGTTAGGGTTTGTT 540
|||||||||||||||||| ||||| ||||||| ||||| ||||||||||||||||||||
Sbjct 551 GAAGTTTCTTTAACATCGATGCCACTGACAGCAGACGTGGCTGGGAAGTTAGGGTTTGTA 610
Query 541 AACCATGTGGTTGAAGAAGGAGAAGCTTTGAAGAAAGCTAGAGAAATAGCAGAGGCTATA 600
|||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 611 AACCATGTGGTTGAAGAAGGAGAAGCGTTAAAGAAAGCTAGAGAAATCGCAGAGGCTATA 670
Query 601 ATCAAGAATGAACAAGGCATGGTTCTTAGGATTAAATCGGTTATCAATGATGGACTAAAG 660
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 671 ATCAAGAATGAACAAGGCATGGTTCTGAGGATTAAATCCGTTATCAATGATGGACTTAAG 730
Query 661 CTTGATCTTGGACATGCTCTCACACTCGAAAAGGAGCGAGCTCACGCGTATTACAATGGG 720
||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 731 CTTGATCTTGGGCATGCTCTCACACTAGAAAAGGAGCGAGCTCACGCGTATTACAGTGGG 790
Query 721 ATGACGAAGGAACAGTTTAAGAA-GATGCAAGAGTTTATTGCTGGACGTGGATCCAAGAA 779
||||||||||||||||||| ||| |||||| |||||||| || |||||||||||||||||
Sbjct 791 ATGACGAAGGAACAGTTTA-GAAAGATGCAGGAGTTTATAGCCGGACGTGGATCCAAGAA 849
Query 780 ACCTACTTCAAAGTTGTAG 798
|||| |||| |||||||||
Sbjct 850 ACCTTCTTCTAAGTTGTAG 868
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38830995631
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5