BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890636
Length=2469
Score E
Sequences producing significant alignments: (Bits) Value
AT4G16180.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 4043 0.0
> AT4G16180.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G28720.1); Has 5
Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other
Eukaryotes - 1 (source: NCBI BLink). | chr4:9165273-9170435
REVERSE LENGTH=2667
Length=2667
Score = 4043 bits (2189), Expect = 0.0
Identities = 2378/2470 (96%), Gaps = 10/2470 (0%)
Strand=Plus/Plus
Query 1 ATGAAGTTGAGATCGGATTCACGATCTACTTCGTTTTCTTCTCTCCTATTCGTCGTC-TT 59
||| |||||||||||||||||||||| | |||||||||||||||||||||||||| | ||
Sbjct 113 ATGGAGTTGAGATCGGATTCACGATCGAGTTCGTTTTCTTCTCTCCTATTCGTCG-CGTT 171
Query 60 TCTCTCGGTTCTAAGCGGACTCGTTTCTCGTACCGAGTCGGCTCAGCAACCTTTCCGCCG 119
||||| | ||||| |||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 172 TCTCTTGTTTCTATGCGGACTCGTTTCTCGTACCGACTCGGCTCAGCAACCTTTCCGTCG 231
Query 120 CGAGCCAGGTCATCCTCACTGGCATCACAGCGCTTTCCTCGACGTACGAGAGAGTGTTCG 179
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 232 CGAGCCAGGTCATCCTCACTGGCATCACAGTGCTTTCCTTGACGTACGAGAGAGTGTTCG 291
Query 180 ATCCGATGTCCGCCGTATGCTTCACTCCCGTGCCGAGGTACCATTTCAGGTTCCTTTGGA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 ATCCGATGTCCGCCGTATGCTTCACTCCCGTGCCGAGGTACCATTTCAGGTTCCTTTGGA 351
Query 240 AGTGAATATAGTGCTTGTAGGTCTGAATGGAGATGGAGGTTACAGGTATTCCGTGGATCC 299
|||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||
Sbjct 352 AGTGAATATAGTGCTTGTGGGTTTGAATGGAGATGGAGGTTACAGGTATTCAGTGGATCC 411
Query 300 TCAAAAATTAGAGGAGTTCTTAAGAGCTAGTTTCTCAACACATAGGCCTTCATGCCAAGA 359
||||||| |||| |||||| ||||||| ||||| ||||||||||||||||||||||||||
Sbjct 412 TCAAAAACTAGAAGAGTTCCTAAGAGCCAGTTTTTCAACACATAGGCCTTCATGCCAAGA 471
Query 360 GACAGGG-GAGCCACTTGATATCGAGCATCGAGTTGTTTATAATATCTTTCCTAGTGGGC 418
||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 472 GAC-GGGCGAGCCACTTGATATTGAGCATCGAGTTGTTTATAATATCTTTCCTAGTGGGC 530
Query 419 AACCTGAATTAATAGCTCTGGAGAAGGCAGTGAAAGAAGCCATGGTGCCTGCTGGAACTG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 AACCTGAATTAATAGCTCTGGAGAAGGCAGTGAAAGAAGCCATGGTGCCTGCTGGAACTG 590
Query 479 CACTAGAGGTTGCTACTGATTTTGGAAGACACTTACCTGCCTTTGACGTAGAGGCAACAA 538
||||||| | | ||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 591 CACTAGA-G--G---CTGATTTTGGAAGACACTTACCTGCCTATGACGTAGAGGCAATAA 644
Query 539 AAGTTGAGTCCGCATTTAACCAGCTTTACTCGTATATATTTGATATTGATGTGGGAGCTG 598
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 645 AAGTGGAGTCCGCATTTAACCAGCTTTACTCGTATATATTTGATATTGATGTGGGTTCTG 704
Query 599 GATCAGCAGCCACGGCGGATAAACCTATACCAAGTGCCATATTTGTTGTGAATTTTGATA 658
||||||| || ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 705 GATCAGCCGCAACGGCAGATAAACCTATACCAAGTGCCATATTTGTAGTGAATTTTGATA 764
Query 659 AGGTAAGAATGGATCCTCGAAATACAGAGATTGATCTAGACAGCTTGATGTTTGCAAAGC 718
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 765 AGGTAAGAATGGATCCTAAAAATACAGAGATTGATCTAGACAGCTTGATGTTTGCAAAGC 824
Query 719 TACCAGAGCTTAGTGATGTAGACAAGGAGAAACAAGAGGCAGATTACATTTATCGATATA 778
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 825 TACCAGAGCTTAGTGATGCAGACAAGGAGAAACAAGAGGCAGATTATATTTATCGATATA 884
Query 779 GATACAATGGTGGAGGAGCATCCCAAGTTTGGCTTGGATCAGGCAGATATGTTGTCATAG 838
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 885 GATACAATGGTGGAGGAGCATCCCAAGTTTGGCTTGCATCAGGCAGATATGTTGTCATAG 944
Query 839 ATTTGTCTGCGGGGCCTTGTACATATGGGAAGATTGAAACTGAAGAGGGAAGTGTTAGTC 898
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 945 ATTTGTCTGCGGGGCCTTGTACATATGGGAAGATTGAAACTGAAGAGGGCAGTGTTAGTC 1004
Query 899 CCAGAACAGTGCCAAGGATACGAAACATAGTGCTTCCAGGAAATGTTAGTCCTGTTGGTC 958
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1005 CCAGAACAGTGCCAAGGATACGAAACATTGTGCTTCCAGGAAATGTTAGCCCTGTTGGTC 1064
Query 959 ATCAGTCTACCCATGATATATTTTCTGGTCAGTTAGCAGCGTTAGTAGCTACTACAATTG 1018
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1065 ATCAGTCTACCCATGATATCTTTTCTGGTCAGTTAGCAGCGTTGGTAGCTACTACAATTG 1124
Query 1019 AGCATGTCATAGCTCCTGATGTCAGGTTTGAGACGGTTGATCTAGCAACTAGGGTGCTGG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 AGCATGTCATAGCTCCTGATGTCAGGTTTGAGACGGTTGATCTAGCAACTAGGGTGCTGG 1184
Query 1079 TACCTATCATTGTGCTCCAAAACCACAATCGATATAATATCATGGAAAGAGGACAAAACT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TACCTATCATTGTGCTCCAAAACCACAATCGATATAATATCATGGAAAGAGGACAAAACT 1244
Query 1139 ACAGCATAAATATTGAAGAGATAGAATCCGAGGTAAAGAAAATGATTCATCATGGGCAAG 1198
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1245 ACAGCATAAATATTGAAGAGATAGAATCTGAGGTAAAGAAAATGATTCATCATGGCCAAG 1304
Query 1199 AAGTAGTGATCGTTGGAGGGGCTCATCCATTACATCGTCATGAGAAATTAGCTATTGCTG 1258
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct 1305 AAGTAGTGATCGTTGGAGGGGCTCATCCATTACATCGTCATGAGAAGTTAGCTATAGCCG 1364
Query 1259 TCTCAAAAGCCATGCGTGGGCATTCCCTTCAAGAAACTAAGAAGGACGGAAGATTTCATG 1318
|||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1365 TCTCAAAAGCTATGCGTGGGCATTCCCTTCAGGAAACGAAGAAGGACGGAAGATTTCATG 1424
Query 1319 TGCATACCAAAACATACCTAGATGGTGCTATCCTCAAAGAAGAGATGGAAAGGTCTACTG 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1425 TGCATACCAAAACATACCTAGATGGTGCTATCCTCAAAGAAGAGATGGAAAGGTCGACTG 1484
Query 1379 ATGTTCTCGCTGCTGGTTTGCTCGACGTGTCTGACCCTGGGCTTTCTAATAAATATTTTC 1438
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 ATGTTCTAGCTGCTGGTTTGCTCGACGTGTCTGACCCTGGGCTTTCTAATAAATATTTTC 1544
Query 1439 TCCGCCAGAGCTGGGATGACGAATCTGAAGGTTCAGGTGATTCCATAGTAAAGCACAGGC 1498
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
Sbjct 1545 TCCGCCAGAGCTGGGATGATGAATCTGAAGGTTCAAGTGATTCCATAGTAAAGCACAGAC 1604
Query 1499 CTCTCTGGTCATCTTATAGCTCAAAACTTCAGAAGGGAAAGAAAAAGAACGTCGTTAAGA 1558
|||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||
Sbjct 1605 CTCTCTGGTCATCTTATAGCTCCAAACTTCAGAAGGGAAAGAAAAAGAAGGCCGTTAAGA 1664
Query 1559 AAAAAGGCGACCTCTACCGCACTTATGGAACAAGAGTTATTCCAGTGTTTATACTCTCAT 1618
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 AAAAAGGCGATCTCTACCGCACTTATGGAACAAGAGTTATTCCAGTGTTTATACTCTCAC 1724
Query 1619 TAGCCGATGTGGATCCAATGCTCATGATGGAAGATGAGAGCCTCGTGTGGGCGACCAGTG 1678
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1725 TAGCCGATGTAGATCCAATGCTCATGATGGAAGATGAGAGCCTCGTGTGGGCGAGCAGTG 1784
Query 1679 ATGTTGTCATTGTGCTTCAGCATCTAAACGAGAAAATACCTTTGAGTTATGTTTCTGAAA 1738
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1785 ATGTTGTCATTGTGCTTCAGCATCTAAATGAGAAAATACCTTTGAGTTATGTTTCTGAAA 1844
Query 1739 CAGAGAGACAACATGCTGTCCCATCACAGGTACAGCGACATATACTTGCAGGTATAGCTT 1798
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1845 CAGAGAGACAGCATGCTGTCCCATCACAGGTACAGCGACATGTACTTGCAGGTATAGCTT 1904
Query 1799 CTGCTTTAGGCGGTGTAAGTGCACCATATGAAAAGACCTCTCACGCGCATGAAAGACCTA 1858
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1905 CTGCTTTAGGCGGTGTAAGTGCACCATATGAAAAGACCTCACACGCGCATGAAAGACCTA 1964
Query 1859 TCACGAATTGGCTTTGGGCAGCCGGTTGTCACCCGTTTGGACCATTCTCAAACGTCTCTC 1918
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1965 TCACCAATTGGCTTTGGGCAGCCGGTTGTCACCCGTTTGGACCATTCTCAAACGTCTCCC 2024
Query 1919 TAATCAGTCAAATGCTTCAAGATGTTGCACTGAGGAATACTATTTATGCACGGGTTGATT 1978
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2025 TGATCAGTCAAATGCTTCAAGATGTTGCACTGAGGAATACTATTTATGCTCGGGTTGATT 2084
Query 1979 CTGCTCTACGCAAAATCCGTGAAACATCAGAGGCAGTACAAAACTTTGCATCTGAATACC 2038
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2085 CTGCTCTACGCAAAATCCGTGAAACATCAGAGGCAGTACAAAACTTTGCATCCGAATACC 2144
Query 2039 TCAAGACTCCACTAGGCGAGCCAGTGAAAGATAAAAAGAACAAAACCAAAACAGAGCTAT 2098
| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2145 TTAAGACTCCACTTGGCGAGCCAGTGAAAGATAAAAAGAACAAAACCAAAACGGAGCTAT 2204
Query 2099 GGGTGGAGAAGTTCTACAAAAAGACAACCACATTGCCTGAGCCTTTCCCACACGAGCTAG 2158
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2205 GGGTCGAGAAGTTCTACAAAAAGACAACAACATTGCCTGAGCCTTTCCCACACGAGCTAG 2264
Query 2159 TCGAAAGATTAGAGAAATATCTAGACACTGTAGAAGAACAATTAGTGGATCTATCTTCTT 2218
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 2265 TCGAAAGATTAGAGAAATATCTAGACACTGTAGAAGAACAACTGGTGGATCTATCTTCTT 2324
Query 2219 TGCTATACGACCACAAGCTATACGATGCTCATCTTAACAGCTCAGAGATTCTTCAGACCA 2278
||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 2325 TGCTATACGACCACAAGCTATACGATGCTCACCTCAACAGCTCAGAGATTCTTCAAACCA 2384
Query 2279 CCATGTTTACACAACAGTACGTAGAACATGTACTGGAAACAGAAAGAGAGAACATGAGAT 2338
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2385 CCATGTTTACACAACAGTACGTAGAACATGTACTGGAAACAGAAAGGGAGAACATGAGAT 2444
Query 2339 GTTGTAAGATAGAGTACAAATACACAGTTGGAGTCAAGTCTTACCAAACGTTGGTGTACG 2398
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2445 GCTGTAAGATAGAGTACAAATACACAGTTGGAGTAAAGTCTTACCAAACGTTGGTGTACG 2504
Query 2399 GAGGAATACTTGTAGCTGGTTTTCTCGTTTATTTCCTTGTCATTTTCTTTTCTTCTCCTC 2458
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2505 GAGGAATACTTGTGGCTGGTTTTCTCGTTTATTTCCTTGTCATTTTCTTCTCTTCTCCTC 2564
Query 2459 CTTCTCGCTA 2468
||||||||||
Sbjct 2565 CTTCTCGCTA 2574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122507674806
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5