BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890654
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
AT5G35450.1 | Symbols: | Disease resistance protein (CC-NBS-LR... 797 0.0
AT1G10920.1 | Symbols: LOV1 | NB-ARC domain-containing disease ... 758 0.0
> AT5G35450.1 | Symbols: | Disease resistance protein (CC-NBS-LRR
class) family | chr5:13667686-13671184 FORWARD LENGTH=3231
Length=3231
Score = 797 bits (431), Expect = 0.0
Identities = 734/880 (83%), Gaps = 21/880 (2%)
Strand=Plus/Plus
Query 1 ATGGCTGAAGGAGTTATCTTGTTTGGAATTGAGAAGCTTTGGGATCTTGTGAGTCGAGAA 60
||||||||||||||| | | ||||||| || |||||||||||| ||| | | |||||||
Sbjct 124 ATGGCTGAAGGAGTTGTGTCGTTTGGAGTTCAGAAGCTTTGGGCGCTTCTTAATCGAGAA 183
Query 61 TCTGAGCAG-TTTCAGGGGGTTCACGAGCAAGTTTCCGAACTAAAACGTCAGTTGGGAAG 119
|| |||| | || | || | | ||||||||| | |||||| |||||| || || |
Sbjct 184 TCCGAGC-GATTGAATGGAATAGATGAGCAAGTTGATGGACTAAAGCGTCAGCTGAGAGG 242
Query 120 GTTACGA-ACTTTGTTGAAAGATGCAGATGCTAAGAAACATGAAAGTGAAAGGGTGAGGA 178
||||| | | ||||||||||||||||||| |||||||||| |||||| ||||||||||
Sbjct 243 GTTAC-AGTCGCTGTTGAAAGATGCAGATGCAAAGAAACATGGAAGTGATAGGGTGAGGA 301
Query 179 ACTTCTTGGAAGATGTAAAAGACATTGTTTATGATGCTGAGGATATAATTGAAACCTTTC 238
|||||||||||||||| |||||| |||||| |||||||||||||||||||||| ||| |
Sbjct 302 ACTTCTTGGAAGATGTCAAAGACCTTGTTTTTGATGCTGAGGATATAATTGAATCCTATG 361
Query 239 TTTTgaaagaaa-gaagaagaaaagaaaaagGGATCAAGAAGCGTGTCACCA-GACTTGC 296
|| || || ||| ||| || ||| ||||||| ||||||| | ||| | | |||||||
Sbjct 362 TTCTG-AACAAACTTAGAGGAGAAGGAAAAGGGGTCAAGAATCATGTGA-GACGACTTGC 419
Query 297 TTCCGTCTTAG-TGGATCACCGGAAAATAGTTTCGGATATCAAGGGAATAACTAAGAGGA 355
|| | |||| | ||||| || || | | ||| |||||| |||| || ||||| ||||
Sbjct 420 TTGCTTCTT-GACGGATCGCCACAAGGTTGCTTCAGATATCGAGGGTATCACTAAAAGGA 478
Query 356 TCTCTGATGTGATCGAGGG-AATGCAGAGTTTTGGGAT---ACTACAGATCATTGATGGT 411
||||| | ||||| | ||| |||||||||||| ||||| || ||| ||||||||||||
Sbjct 479 TCTCTAAGGTGATTG-GGGAAATGCAGAGTTTAGGGATACAACAACAAATCATTGATGGT 537
Query 412 GGGCGTTCATTGTCCCTTCAGGATAGACAAAGGGAAG-TCCGACAAACATATCCTAACAA 470
|| ||||| |||| |||||||| | ||| |||| || |||| ||||| | ||||||||
Sbjct 538 GGTCGTTCGCTGTCTCTTCAGGACATACAGAGGG-AGATCCGGCAAACGTTTCCTAACAG 596
Query 471 TTCTGAAAGCGATCTTGTGGGGGTGGATCAGAGTGTTGAAGATTTGGTTGGT-CAATTGG 529
||||||||||||||||| |||||||| || ||||||||||| ||||||||| | | |||
Sbjct 597 CTCTGAAAGCGATCTTGTCGGGGTGGAGCAAAGTGTTGAAGAATTGGTTGGTCCTA-TGG 655
Query 530 TGGGAAA-TGATAACATTCAAGTGGTTTCTATATCCGGGATGGGTGGTATTGGTAAAACC 588
| ||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 656 T-GGAAATTGATAACATTCAAGTGGTTTCTATATCTGGGATGGGCGGTATTGGTAAAACC 714
Query 589 ACTTTGGCCAGACAAGTTTTTCATCATGACATAGTACGACGTCATTTTGATGGATTCGCA 648
||||||||||||||| | ||||||||||| |||| || |||||||||||||||||||||
Sbjct 715 ACTTTGGCCAGACAAATCTTTCATCATGATTTAGTCCGGCGTCATTTTGATGGATTCGCA 774
Query 649 TGGATTTGTGTTTCGCAACAGTTTACACAGAAGTATGTTTGGCAAAGAATCTTGCAAGAA 708
||| | |||||||||||||| ||||| |||||| |||||||||| |||||||||||||||
Sbjct 775 TGGGTCTGTGTTTCGCAACAATTTACTCAGAAGCATGTTTGGCAGAGAATCTTGCAAGAA 834
Query 709 CTTAGGCCAGATGATGGGGAGATTTTACAGATGGATGAGTTTACACGACAAGGTAAACTC 768
||| ||||| | ||||| ||||| ||||||||||| || | |||| || |||||||||
Sbjct 835 CTTCGGCCACACGATGGTGAGATCTTACAGATGGACGAATATACAATCCAGGGTAAACTC 894
Query 769 TTTCAGTTGTTGGAAACTGACAGATATTTGATTGTCTTAGATGATATATGGAAAGCAGAA 828
||||||||||||||||| | ||||||||| ||||| | |||||| ||||||||| ||||
Sbjct 895 TTTCAGTTGTTGGAAACCGGTAGATATTTGGTTGTCCTCGATGATGTATGGAAAGAAGAA 954
Query 829 GACTGGGACCGAATAAAAGAAGTGTTTCCACAGAAAAGAG 868
|||||||| |||||||||||||||||||||| ||||||||
Sbjct 955 GACTGGGATCGAATAAAAGAAGTGTTTCCACGGAAAAGAG 994
> AT1G10920.1 | Symbols: LOV1 | NB-ARC domain-containing disease
resistance protein | chr1:3644420-3647768 REVERSE LENGTH=2847
Length=2847
Score = 758 bits (410), Expect = 0.0
Identities = 733/887 (83%), Gaps = 29/887 (3%)
Strand=Plus/Plus
Query 1 ATGGCTGAAGGAGTTATCTTGTTTGGAATTGAGAAGCTTTGGGATCTTGTGAGTCGAGAA 60
||||||||||||||| | ||||||||| || | ||||||||||| ||| ||| |||||||
Sbjct 122 ATGGCTGAAGGAGTTGTGTTGTTTGGAGTTCATAAGCTTTGGGAGCTTCTGAATCGAGAA 181
Query 61 TCTGAGCAG-TTTCAGGGGGTTCACGAGCAAGTTTCCGAACTAAAACGTCAGTTGGGAAG 119
|||| || | || | || || || |||||| | |||||| |||||| |||||||
Sbjct 182 TCTGCGC-GATTGAATGGAATTGGTGAACAAGTTGATGGACTAAAGCGTCAGCTGGGAAG 240
Query 120 GTTACGA-ACTTTGTTGAAAGATGCAGATGCTAAGAAACATGAAAGTGAAAGGGTGAGGA 178
||||| | | ||| |||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 241 GTTAC-AGTCATTGCTGAAAGATGCCGATGCCAAGAAACATGAAAGTGAAAGGGTGAGAA 299
Query 179 AC-TTCTTGGAAGATGTAAAAGACATTGTTTATGATGCTGAGGATATAATTGAAACCTTT 237
|| ||| |||||||||| | ||||||||||||||||||||||||||||| ||| |||||
Sbjct 300 ACTTTC-TGGAAGATGTCAGGGACATTGTTTATGATGCTGAGGATATAATCGAATCCTTT 358
Query 238 CTTTTgaaagaaagaagaagaaaagaaaaagGGATCAAGAAGCGTGTC-ACCAGACTTGC 296
||| |||| ||| |||| ||||||||||||||||||||||| || | | ||||||||
Sbjct 359 CTTCTGAACGAATTTAGAACAAAAGAAAAAGGGATCAAGAAGCATG-CGAGAAGACTTGC 417
Query 297 TTCCGTCTTAGTGGATCACCGGAAAATAGTTTCGGATATCAAGGGAATAACTAAGAGGAT 356
|| | |||||||||||| ||||||| | | ||| |||||||| || |||||| ||| |||
Sbjct 418 TTGCTTCTTAGTGGATCGCCGGAAATTTGCTTCAGATATCAAAGGCATAACTTAGAAGAT 477
Query 357 CTCTGATGTGATCGAGGGAATGCAGAGTTTTGGGATACTACAGATCATTGATGGTGGGCG 416
|| || ||||| | ||||||| ||||||| || |||| | |||| || ||||||| |
Sbjct 478 TTCCGAGGTGATTGGGGGAATGAAGAGTTTAGGAATACAAGAGATTATCGATGGTGCTAG 537
Query 417 TTC-ATTGTCCCTTCAGGATAGACAAA-GG-G----A--AG-TCCGACAAACATATCCTA 466
||| | |||| || || || ||||||| || | | || |||| ||||| | | |||
Sbjct 538 TTCGA-TGTCGCTGCAAGAAAGACAAAGGGAGCAAAAGGAGATCCGGCAAACGTTTGCTA 596
Query 467 ACAATTCTGAAAGCGATCTTGTGGGGGTGGATCAGAGTGTTGAAG-ATTTGGTTGGTCAA 525
||| |||||||||||| |||||||||||||| ||||||||||||| | |||| ||||||
Sbjct 597 ACAGTTCTGAAAGCGACCTTGTGGGGGTGGAACAGAGTGTTGAAGCA-TTGGCTGGTCAC 655
Query 526 TTGGTGGGA-AATGATAACATTCAAGTGGTTTCTATATCCGGGATGGGTGGTATTGGTAA 584
||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 656 TTGGT-GGAGAATGATAACATTCAAGTGGTTTCTATATCTGGGATGGGTGGTATTGGTAA 714
Query 585 AACCACTTTGGCCAGACAAGTTTTTCATCATGACATAGTACGACGTCATTTTGATGGATT 644
||||||| | || |||||||| |||||||||||||| |||| ||| ||||||||||||||
Sbjct 715 AACCACTCTCGCAAGACAAGTCTTTCATCATGACATGGTACAACGCCATTTTGATGGATT 774
Query 645 CGCATGGAT-TTGTGTTTCGCAACAGTTTACACAGAAGTATGTTTGGCAAAGAATCTTGC 703
||||||| | || |||||||||||||||||| |||||| |||||||||| || |||| ||
Sbjct 775 CGCATGGGTCTT-TGTTTCGCAACAGTTTACGCAGAAGCATGTTTGGCAGAGGATCTGGC 833
Query 704 AAGAACTT-AGGCCAGATGATGGGGAGATTTTACAGATGGATGAGTTTACACGACAAGGT 762
|||||||| | ||| | ||||||| |||| ||| ||||| ||| || || || |||
Sbjct 834 AAGAACTTCAA-CCACAAAATGGGGACATTTCACATATGGACGAGCATATACTCCAGGGT 892
Query 763 AAACTCTTTCAGTTGTTGGAAACTGACAGATATTTGATTGT-CTTAGATGATATATGGAA 821
||||||||| | ||||| ||||| | ||||||||| |||| ||| ||||| |||||||
Sbjct 893 AAACTCTTTAAATTGTTAGAAACCGGTAGATATTTGGTTGTTCTT-GATGACGTATGGAA 951
Query 822 AGCAGAAGACTGGGACCGAATAAAAGAAGTGTTTCCACAGAAAAGAG 868
|| |||||||||||||||||| |||| ||||||||| | ||||||||
Sbjct 952 AGAAGAAGACTGGGACCGAATTAAAGCAGTGTTTCCGCGGAAAAGAG 998
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78212449110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5