BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890667
Length=2142
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15980.1 | Symbols: | Plant invertase/pectin methylesterase... 1775 0.0
> AT4G15980.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr4:9057466-9059983 REVERSE LENGTH=2106
Length=2106
Score = 1775 bits (961), Expect = 0.0
Identities = 1175/1275 (92%), Gaps = 27/1275 (2%)
Strand=Plus/Plus
Query 889 TCTTCCGAGAATCAACCACTAGATTCTTCCG-ATAAACTTCCTCAAAAATCGAC-TTCTT 946
|||||| ||||||||| | | || ||||||| | | || |||| |||||||| | || ||
Sbjct 838 TCTTCCAAGAATCAACAAATGGAATCTTCCGAAGATAC-TCCTAAAAAATCGGCATT-TT 895
Query 947 CTGAGAATCAGCCATT-G--GATTCTTTAGAGAGTAA--TCCTCAAAAATCAACTTCTAC 1001
| | |||||| ||||| | || |||| || | || |||||||||||| |||||| |
Sbjct 896 CAGGGAATCAACCATTAGACGACTCTTCCGATA--AACTTCCTCAAAAATCGACTTCTTC 953
Query 1002 CGAGAATCGACCGTTGGA-TCCT------A-----CTCAAAATTCGGA-TTCT-TCCATT 1047
||||| | ||||||||| |||| | ||||||| || | |||| | |
Sbjct 954 TGAGAACCAACCGTTGGATTCCTCCGAGAACCCTCCTCAAAAATC-AACTTCTAGCGA-G 1011
Query 1048 ATTCGACCATTGGATCCTCTTAGAAAATTAAATCCCCTTAATAAATTGGATTCTTCAAAG 1107
| |||||| |||||||||||| | ||||| ||||||||||||||||||||||||| |||
Sbjct 1012 AATCGACCGTTGGATCCTCTTCGCAAATTGAATCCCCTTAATAAATTGGATTCTTTGAAG 1071
Query 1108 GATCGACACTTATCGGAGGAAGGAGAGTTCCCACCATGGGTAACACGGCATTCGCGAAGG 1167
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||
Sbjct 1072 GATCGACACTTATCGGAGGAAGGAGAGTTCCCGCCATGGGTAACACCGCATTCGCGGAGG 1131
Query 1168 CTTCTTGCACGTGGACCTAGAAATAATGGAATCAGAGCGGACGTTGTGGTTGCAAAAGAC 1227
|||||||||||| ||||||||||||||||||||| |||| | |||||||||||||| |||
Sbjct 1132 CTTCTTGCACGTAGACCTAGAAATAATGGAATCAAAGCGAATGTTGTGGTTGCAAAGGAC 1191
Query 1228 GGGAGTGGTAAGTGCAAGACTATCGCACAAGCATTGGCAATGGTACCAATGAAGAACACA 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 GGGAGTGGTAAGTGCAAGACTATCGCACAAGCATTGGCAATGGTACCAATGAAGAACACA 1251
Query 1288 AAAAAGTTTGTAATTCACATAAAGCAAGGTGTTTACAAGGAGAAAGTAGAGGTAACCaaa 1347
|| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1252 AAGAAGTTTGTGATTCACATAAAGGAAGGTGTTTACAAGGAGAAAGTAGAGGTAACCAAA 1311
Query 1348 aaaaTGCTTCACGTCATGTTCGTTGGAGACGGACCAACAAAGACGATTATCACTGGAGAC 1407
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1312 AAAATGCTACACGTCATGTTCGTTGGAGACGGACCAACAAAGACGGTTATCACTGGAGAC 1371
Query 1408 ATTGCCTTCTTACCAAACCAAGTCGGCACCTACCGCACTGCCTCCGTTGCGGTGAATGGG 1467
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1372 ATTGCCTTCTTACCAGACCAAGTCGGCACCTACCGCACCGCCTCCGTTGCGGTGAATGGG 1431
Query 1468 GACTATTTCATGGCAAAGGACATAGGGTTCGAGAATACGGCAGGAGCGGCACGCCATCAA 1527
|||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 1432 GACTATTTCATGGCAAAGGATATAGGGTTCGAGAACACGGCAGGAGCTGCACGCCATCAA 1491
Query 1528 GCAGTCGCACTACGAGTTTCAGCCGATTTTGCTGTGTTCTTCAACTGTCATATGAATGGT 1587
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1492 GCAGTCGCACTCCGAGTTTCAGCCGACTTTGCTGTGTTCTTCAACTGTCATATGAATGGT 1551
Query 1588 TACCAAGACACGCTTTACGTCCACACTCATCGTCAATTCTACCGTAACTGCCGCGTCTCA 1647
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1552 TACCAAGACACGCTTTACGTCCATACTCATCGTCAATTCTACCGTAACTGCCGTGTCTCA 1611
Query 1648 GGCACCATTGATTTCGTCTTCGGTGATGCCAAGGCCGTTTTTCAGAACTGCGAATTCGTT 1707
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1612 GGCACGATCGATTTCGTCTTCGGTGACGCCAAGGCCGTTTTTCAGAACTGCGAATTCGTT 1671
Query 1708 ATCCGCCGTCCCATGGAACACCAACAGTGCATAGTCACAGCACAAGGACGAAAAGACCGG 1767
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1672 ATCCGCCGTCCCATGGAACACCAACAGTGCATCGTCACAGCACAAGGACGAAAAGACCGG 1731
Query 1768 CGTGAGACGACTGGGATTGTTATCCACAATAGCCGTATAACCGGTGATGCATCATATCTT 1827
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 CGTGAGACAACTGGGATTGTTATCCACAATAGCCGTATAACCGGTGATGCATCATATCTT 1791
Query 1828 CCCGTGAAAGCCAAGAACAGAGCATTTTTGGGACGGCCATGGAAAGAGTTTTCGAGGACA 1887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 CCCGTGAAAGCCAAGAACAGAGCATTTTTGGGACGGCCATGGAAAGAGTTTTCGAGGACA 1851
Query 1888 ATCATAATGAATACAGAGATTGATGATGTGATAGACCCAGAGGGTTGGTTGAAGTGGAAC 1947
|| |||||||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1852 ATTATAATGAACACAGAGATTGATGATGTGATAGACCCGGAAGGTTGGTTGAAGTGGAAC 1911
Query 1948 GAGACGTTCGCGCTCAACACGTTGTTCTACACTGAGTACCGCAACAGAGGTCGTGGTTCG 2007
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1912 GAGACGTTTGCGCTCAACACGTTGTTCTACACTGAGTACCGCAACAGAGGTCGTGGTTCG 1971
Query 2008 GGTCAGGGTCGTCGGGTTAGGTGGAGAGGTATCAAGCGGATCTCTGATAGAGTCGCAAGG 2067
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1972 GGTCAGGGTCGTCGGGTTAGGTGGAGAGGTATCAAGCGGATCTCTGATAGAGCCGCAAGG 2031
Query 2068 GAGTTTGCTCCCGGGAATTTCCTACGTGGCAACACGTGGATACCACAGACGCGTATACCT 2127
||||||||||||||||||||| ||||||||||||| ||||| ||||| |||||||| ||
Sbjct 2032 GAGTTTGCTCCCGGGAATTTCTTACGTGGCAACACATGGATCCCACAAACGCGTATTCCA 2091
Query 2128 TATAATGCTAACTGA 2142
|| ||||||||||||
Sbjct 2092 TACAATGCTAACTGA 2106
Score = 1386 bits (750), Expect = 0.0
Identities = 939/1031 (91%), Gaps = 10/1031 (1%)
Strand=Plus/Plus
Query 1 ATGAAGAAATATGTCTTGTTAGGCCTCACGGCTCTCCTTATGGCAATGGTCATTTGTGTA 60
||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGAATAAATATGTCTTGTTAGGCGTCACGGCTCTCATTATGGCAATGGTCATTTGTGTA 60
Query 61 GAGGCCAACGATGGCAGCAGCCCGAGTAGAAAAATGGAAGAGATTCACCGTGAAAGCAAG 120
|||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||
Sbjct 61 GAGGCCAACGATGGCAACAGCCCGAGTAGGAAAATGGAAGAGGTTCACCGTGAAAGCAAG 120
Query 121 CTGATGATAACAAAGACGGCGGTGACTATTATATGTTCCTCCACCGATTACAAACAAGAT 180
|||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct 121 CTGATGATAACAAAGACGACGGTGAGTATTATATGTGCCTCCACCGATTACAAACAAGAT 180
Query 181 TGCACCACGAGTCTCGCAACCGTGAGGTCGCCGGATCCCCGAAATCTAATAAGATCTGCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGCACCACGAGTCTCGCAACCGTGAGGTCGCCGGATCCCCGAAATCTAATAAGATCTGCT 240
Query 241 TTCGATCTCGCTATCGTCTCAATTAGAAGTGGAATTGACAGGGGGATGATTGATCTAAAA 300
|| || || |||||| |||| ||| |||||||||| ||||| |||||||||||||||||
Sbjct 241 TTTGACCTTGCTATCATCTCGATTCGAAGTGGAATCGACAGAGGGATGATTGATCTAAAG 300
Query 301 AGTAGAGCGGATGCGGATGTGCACACAAG-GAACGCGCTGAATACTTGTCGAGAGCTTAT 359
|||||||| ||||| ||| |||||||||| ||| ||||| ||||||||| ||||||||||
Sbjct 301 AGTAGAGCAGATGCCGATATGCACACAAGAGAA-GCGCTTAATACTTGTAGAGAGCTTAT 359
Query 360 GGATGATGCAATTGATGATCTTCGAAAAACGAGAGATAAATTTAGGGGATTTTTGTTCAC 419
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 GGATGATGCGATTGATGATCTTCGAAAAACGAGGGATAAATTTAGGGGATTTTTGTTCAC 419
Query 420 AAGATTGTCAGACTTTGTTGAGGATCTTTGTGTGTGGCTCAGTGGATCAATCACATACCA 479
|||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 420 TAGATTGTCAGACTTCGTTGAGGATCTTTGTGTGTGGCTTAGCGGATCAATCACATACCA 479
Query 480 ACAGACGTGCATCGATGGATTTGAAGGGATAGATAGCGAAGCGGCCATGATGATGGAGAG 539
|||||||||||| ||||||||||||||||| ||||| ||||||||| |||||||||||||
Sbjct 480 ACAGACGTGCATTGATGGATTTGAAGGGATTGATAGTGAAGCGGCCGTGATGATGGAGAG 539
Query 540 AGTCATGAGGAAGGGGCAGCGTCTCACTAGCAATGGATTAGCGATTGCCGCAAATCTCGA 599
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 540 AGTCATGAGGAAGGGGCAGCATCTCACTAGCAATGGATTGGCGATTGCCGCAAATCTCGA 599
Query 600 TAAGTTATTGAAGGCTTTTCGTATTCCATTTCCATTTCTCAGGTCAAGAAGAGACAGACT 659
||| |||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||
Sbjct 600 TAAATTATTGAAGGCTTTCCGTATTCCATTTCCATTTCTTAGGTCAAGAAGAGGCAGACT 659
Query 660 CGGCATTTTAGGTTCAGGTTCTTCACGAGACCAATCTGTGGGTTCTTCCCAAGATCCCCC 719
||||||||||||||| ||||||||||||||| |||| |||||||||||||||||| ||||
Sbjct 660 CGGCATTTTAGGTTCGGGTTCTTCACGAGACGAATCGGTGGGTTCTTCCCAAGATTCCCC 719
Query 720 TCCAAATGTGGATTCTTCTGATAATTCTCCTAAAACAATGGAGTCCTCGGAGAATCGACC 779
|||||||| |||||||||||| ||||||||| ||| |||| || |||||||||| |||
Sbjct 720 TCCAAATGAAGATTCTTCTGATGATTCTCCTAGCACAGTGGACTCTTCGGAGAATCAACC 779
Query 780 ATTGGATTC--C-TCAGAGAATCGGCCGTCGGATTCTTCAAATAATAGACCGTTGGATTC 836
| ||||||| | ||||| |||| | ||||||| ||||||||||||||||| || |||||
Sbjct 780 AGTGGATTCTTCATCAGAAAATCAGTCGTCGGACTCTTCAAATAATAGACCATTAGATTC 839
Query 837 TTCCGAGAATCGACCAAA-GGAATCTTCCGAAAATTCTCCTCAAAAATTGACATCTTCCG 895
|||| |||||| || ||| ||||||||||||| || ||||| |||||| | ||| ||| |
Sbjct 840 TTCCAAGAATCAAC-AAATGGAATCTTCCGAAGATACTCCTAAAAAATCGGCATTTTCAG 898
Query 896 AGAATCAACCACTAGAT---TCTTCCGATAAACTTCCTCAAAAATCGACTTCTTCTGAGA 952
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GGAATCAACCATTAGACGACTCTTCCGATAAACTTCCTCAAAAATCGACTTCTTCTGAGA 958
Query 953 ATCAGCCATTGGATTCTTTAGAGAGTAATCCTCAAAAATCAACTTCTACCGAGAATCGAC 1012
| || || |||||||| | |||| |||||||||||||||||||| |||||||||||
Sbjct 959 ACCAACCGTTGGATTCCTCCGAGAACCCTCCTCAAAAATCAACTTCTAGCGAGAATCGAC 1018
Query 1013 CGTTGGATCCT 1023
|||||||||||
Sbjct 1019 CGTTGGATCCT 1029
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106224353220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5