BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890682
Length=2451
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16630.1 | Symbols: ATKINESIN-13A, KINESIN-13A | P-loop cont... 1851 0.0
AT4G15885.1 | Symbols: | kinesin motor protein-related | chr4:... 494 2e-138
> AT3G16630.1 | Symbols: ATKINESIN-13A, KINESIN-13A | P-loop containing
nucleoside triphosphate hydrolases superfamily protein
| chr3:5662384-5667803 REVERSE LENGTH=3033
Length=3033
Score = 1851 bits (1002), Expect = 0.0
Identities = 1760/2114 (83%), Gaps = 100/2114 (5%)
Strand=Plus/Plus
Query 1 ATGGGCGGCCAAATGCAGC-AGACTAATGCTGCGGCTGCGACGGCGCTGTATGACAATGC 59
||||||||||||||||||| | || ||||||||||||||||||||||| || || ||
Sbjct 373 ATGGGCGGCCAAATGCAGCAAAAC-AATGCTGCGGCTGCGACGGCGCTTTACGATGGGGC 431
Query 60 AGGACCTACAAATGAGGCTGGCGATGCTGTTATGGCACGGTGGCTCCAGTCTGCTGGTTT 119
||| || ||||| || || ||||| || |||||||||||||| || || ||||||||
Sbjct 432 TTTACCCACTAATGACGCAGGAGATGCAGTCATGGCACGGTGGCTTCAATCCGCTGGTTT 491
Query 120 GCAGCATCTGGCGTCACCTGTTGCTTCTACAGGCATTGATCAGCGCCATCTCCCAAACCT 179
||||||| ||||||| ||||||||||||||||||| ||||||||| || |||||||||||
Sbjct 492 GCAGCATTTGGCGTCTCCTGTTGCTTCTACAGGCAATGATCAGCGTCACCTCCCAAACCT 551
Query 180 GCTCATGCAGGGTTATGGAGCACAAACTGCTGAAGAGAAGCAAAGACTATTCAAATTAAT 239
|||||||||||||||||||| || |||||||||||||| |||||||| ||| || ||||
Sbjct 552 TCTCATGCAGGGTTATGGAGCTCAGACTGCTGAAGAGAAACAAAGACTGTTCCAACTAAT 611
Query 240 GAGAAATCTTAATTTCAATGGGGAATCGACTTCTGAGCCGTATACACCCACTGGTCAAAC 299
||||||||| ||||| |||||||| ||||||||||| | |||||||| |||| ||| ||
Sbjct 612 GAGAAATCTCAATTTTAATGGGGAGTCGACTTCTGAATCATATACACCAACTGCTCACAC 671
Query 300 ATCAGCAGCTTTGCCCTCTTCGGATGGATTTTATTCACCTGAATTCAGAGGTGACTTTGG 359
|||||||||| ||||||||||||| ||||||| ||||||||| ||||||||||| |||||
Sbjct 672 ATCAGCAGCTATGCCCTCTTCGGAAGGATTTTTTTCACCTGAGTTCAGAGGTGATTTTGG 731
Query 360 AGCTGGGTTGCTAGATCTTCACGCAATGGATGACACAGAGCTGCTATCCGAGCATATGAT 419
||| || || | |||||||| ||||||||||| |||||||| ||||| |||||| ||||
Sbjct 732 AGCAGGATTATTGGATCTTCATGCAATGGATGATACAGAGCTTCTATCTGAGCATGTGAT 791
Query 420 TTCTGAACCCTTTGAGCCATCACCTTTCATGCCTAGTGTCAATCAAGCATTTGAAGAAGA 479
| | |||||||||||||| |||||||||||||||||||| ||| ||| ||||||||||||
Sbjct 792 TACCGAACCCTTTGAGCCGTCACCTTTCATGCCTAGTGTAAATAAAGAATTTGAAGAAGA 851
Query 480 GTTTAATGTGCCAGCTAACCGGAAACAGCTACAAGAG-CAGGATGCTGAACCTTCGAGCT 538
| |||| || ||||||| || |||||| ||| || || || |||||||||| | | |
Sbjct 852 CTATAATTTGGCAGCTAATCGTCAACAGCGGCAACAGACA-GAAGCTGAACCTTTGGGTT 910
Query 539 CATTTTCCAGGAGTGAAAAAGAAAGTAGTGGAAGAGAGAACAATGTAGCCAAAATTAAAG 598
| || || | ||||| | || ||| | | |||| ||||||||| |||||||
Sbjct 911 TA-TTGCC-----T--AAAAGTGA-TA-AAGAA-A-ATAACAGTGTAGCCAAGATTAAAG 958
Query 599 TAGTGGTAAGGAAGAGACCCCTAAATAA-AAAGGAAACTGCCAAAAAGGAGGACGATATC 657
||||||||||||| ||||||||||| || ||| ||||| || ||||||||||| ||| ||
Sbjct 959 TAGTGGTAAGGAAAAGACCCCTAAACAAGAAA-GAAACAGCTAAAAAGGAGGAGGATGTC 1017
Query 658 GTGACTGTATCTAATAATTCTTTGACTGTTCATGAAACCA-AGTTGAAGGTGGATTTGAC 716
||||| |||||| |||||||||||||||| ||||| ||| || ||||||| ||||||||
Sbjct 1018 GTGACGGTATCTGATAATTCTTTGACTGTCCATGAGCCCAGAG-TGAAGGTTGATTTGAC 1076
Query 717 TGCTTATATGGAAAGGCATGAGTTTTGCTTTGATGCTGTTCTGGATGAGCATGTTTCAAA 776
||||||| |||||| ||||||||| ||||||||||||||||| |||||| ||||||||||
Sbjct 1077 TGCTTATGTGGAAAAGCATGAGTTCTGCTTTGATGCTGTTCTAGATGAGGATGTTTCAAA 1136
Query 777 TGACGAGGTGTATCGGGCCACTATAGAGCCAATTATTCCCACCATTTTCCAGAGAACCAA 836
||||||||||||||||||||| || |||||||| ||||||| |||||||||||||| ||
Sbjct 1137 TGACGAGGTGTATCGGGCCACAATTGAGCCAATAATTCCCATTATTTTCCAGAGAACTAA 1196
Query 837 AGCTACATGTTTTGCATATGGTCAAACAGGTAGCGGTAAGAC-TTTCACAATGAAACCAC 895
||||||||| ||||||||||| ||||||||||| |||||||| ||| ||||||||||||
Sbjct 1197 AGCTACATGCTTTGCATATGGCCAAACAGGTAGTGGTAAGACATTT-ACAATGAAACCAT 1255
Query 896 TGCCTATACGGGCTGTTCAAGATCTTATGAGGATGTTGAATCAACCAGTATATC-GTGAT 954
| |||||||| || ||| |||||||||||||| ||||| |||||||||||| | | ||
Sbjct 1256 TACCTATACGAGCAGTTGAAGATCTTATGAGGTTGTTGCGTCAACCAGTATA-CAGCAAT 1314
Query 955 CAGAGGCTTAAGTTGTGGCTCAGTTATTTTGAGATATATGGTGGAAAGTTGTAT-GATCT 1013
|||||| |||| ||||||||||| |||||||||||||||||||||||| ||| | |||||
Sbjct 1315 CAGAGGTTTAAATTGTGGCTCAGCTATTTTGAGATATATGGTGGAAAGCTGT-TCGATCT 1373
Query 1014 TCTCTCCGAGAGAAGGAAACTTTGTATGCGAGAAGATGGTAGACAACAAGTTTGCATTGT 1073
|||| ||||||| ||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1374 TCTCAGTGAGAGAAAGAAACTTTGCATGCGAGAAGATGGTAGACAGCAAGTTTGCATTGT 1433
Query 1074 TGGCCTGCAAGAGTATGAAGTCTCGGATGTTCAAATTGTAAAGGATTTTATTGAAAAAGG 1133
|||||||||||| |||||||| || ||||| |||||||||||||||||||| || |||||
Sbjct 1434 TGGCCTGCAAGAATATGAAGTTTCAGATGTACAAATTGTAAAGGATTTTATCGAGAAAGG 1493
Query 1134 GAATGCTTCAAGGAGCACAGGATCAACTGGCGCCAATGAGGAATCATCTAGATCACATGC 1193
||||| |||||||||||| |||||||| || ||||||||||| |||||||| |||||
Sbjct 1494 AAATGCCGAAAGGAGCACAGGTTCAACTGGAGCAAATGAGGAATCTTCTAGATCGCATGC 1553
Query 1194 TATTTTGCAGCTTGTTGTCAAGAAGCATGTGGAGGTAAAAGAAACTAGACGAAGTAATAA 1253
|| | ||||||||||| || |||||||| ||||||||||| |||||||| || |||||
Sbjct 1554 CATCCTACAGCTTGTTGTAAAAAAGCATGTTGAGGTAAAAGACACTAGACGGAGGAATAA 1613
Query 1254 CGATAGTAATGAATCACGAGGGAAAGTTGTTGGG-AAGATTTCTTTCATCGATCTTGCTG 1312
||||||||||||| | |||||||||| |||| |||||||||||||| || |||||||
Sbjct 1614 TGATAGTAATGAATTGCCTGGGAAAGTTG-TGGGAAAGATTTCTTTCATTGACCTTGCTG 1672
Query 1313 GCAGTGAAAGAGGTGCAGACACCACAGACAATGACCGCCAGACAAGGATTGAAGGTGCAG 1372
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1673 GCAGTGAAAGAGGTGCAGACACCACAGACAATGATCGCCAGACAAGGATTGAAGGCGCAG 1732
Query 1373 AAATCAATAAGAGTCTCTTAGCTCTCAAAGAATGTATCCGTGCACTGGACAATGACCAGC 1432
||||||| ||||||||||| ||||| || |||||||| ||||||||||||||||||||||
Sbjct 1733 AAATCAACAAGAGTCTCTTGGCTCTTAAGGAATGTATACGTGCACTGGACAATGACCAGC 1792
Query 1433 TACATATTCCCTTCCGTGGAAGCAAGCTAACTGAAGTGCTCCGCGACTCATTTGTTGGAA 1492
||||||| || || ||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 1793 TACATATACCATTTCGTGGAAGCAAACTAACGGAAGTGCTCCGTGACTCATTTGTTGGAA 1852
Query 1493 ACTCAAGAACTGTGATGATTTCATGCATTTCTCCAAACGAAGGATCATGTGAACATACCC 1552
|||||||||| ||||||||||| ||||| |||||||| | |||||| |||||||||||||
Sbjct 1853 ACTCAAGAACGGTGATGATTTCCTGCATCTCTCCAAATGCAGGATCGTGTGAACATACCC 1912
Query 1553 TTAATACAT-TAAGATACGCCGATCGGGTTAAAAGTCTATCTAAAAGTGGGAATAGCAAG 1611
| ||||| | ||||||| || ||||| || |||||||||||||||||||| |||||||||
Sbjct 1913 TCAATAC-TCTAAGATATGCTGATCGAGTCAAAAGTCTATCTAAAAGTGGAAATAGCAAG 1971
Query 1612 AAGGATCAAACTTCCAATTTGTTGCCTCCAGCTACTAAGGATGTTTCTTTGGCTTCCTCT 1671
|| ||||||||| | |||| ||||||| | || ||||||| ||||| ||
Sbjct 1972 AAAGATCAAACTGCGAATTCAATGCCTCCGGTTAATAAGGATC---CTTTG--TTG---- 2022
Query 1672 CAACTGGCTTCAAATGATGTAGAAGATGTCCTTGAGCCTCCACAAGAACCT-AATGTAC- 1729
||| |||||||||||||||||||| ||||||||||||| ||| | |||||||
Sbjct 2023 -----GGCC-CAAATGATGTAGAAGATGTCTTTGAGCCTCCACAGGAAG-TGAATGTACC 2075
Query 1730 AGGAGACGGGGAGGAGGGTAGA-GA-AAG-ACAGCTACT-C--TACTTCGGGTATTGAAT 1783
|| | || |||||||||| | || ||| ||||| || | ||| ||||||||||| |
Sbjct 2076 AGAA-ACCAGGAGGAGGGTGGTCGAGAAGGACAGCAACAGCAGTACGTCGGGTATTGACT 2134
Query 1784 TCA-AGCAGCCTACGCATTACCCTTCTTCATATCCGGTCAACTTTAGAGAGGAAAGTGGC 1842
||| | |||||||| | | || || | | | ||| | |||||||
Sbjct 2135 TCAGA-CAGCCTACA-A--A---TT----AT--C-G---A------GAG-G-AAAGTGGA 2169
Query 1843 ATACCATCGATA-TCAATGGACAAAGGAAGA-CAAGATACGAGCAATTCTTTTGGC-GGC 1899
|| ||||| || ||||||||||| |||||| || || ||| || |||||||| | |||
Sbjct 2170 ATCCCATC-ATTCTCAATGGACAAGGGAAGATCA-GAGCCGAACAGTTCTTTTG-CTGGC 2226
Query 1900 TCCACTAGTCAAAGGATTCACTCAT--CTTCTTACTCTC-AAGACAGTTCAGATCAG-GA 1955
||||||||||| || | || ||| |||| || || | |||| | |||||| | | ||
Sbjct 2227 TCCACTAGTCAGAGAAA-CAA-CATTTCTTCATA-TCCCCAAGAAACTTCAGACC-GTGA 2282
Query 1956 AGAAAAAGTGAAGAAGGTATCACCCCCTCGTAGGAAAGT-TTCCCGGGAGGAAAAACCTG 2014
||| ||||| ||||| || ||||| |||||| |||||| || | |||| |||||||| |
Sbjct 2283 AGAGAAAGTAAAGAAAGTGTCACCACCTCGTGGGAAAGGGTTGC-GGGAAGAAAAACCAG 2341
Query 2015 AAAGAACTCAAAACTGGTCAAAAAGAGATGTCATCAGTGCATCTGATGTCCCTGCCACGA 2074
| ||| | ||||| ||||| ||||||||||||| || | || ||| ||||| || ||
Sbjct 2342 ACAGACCACAAAATTGGTCTAAAAGAGATGTCA---GTTCGTCGGATATCCCTACCTTGA 2398
Query 2075 CAAACTCTAGACAG 2088
|||| | |||||||
Sbjct 2399 CAAATTTTAGACAG 2412
> AT4G15885.1 | Symbols: | kinesin motor protein-related | chr4:9016451-9016978
REVERSE LENGTH=342
Length=342
Score = 494 bits (267), Expect = 2e-138
Identities = 300/316 (95%), Gaps = 2/316 (1%)
Strand=Plus/Plus
Query 2137 ACAGCTTCAAGGCAGTATGAAACAACGGAGCCTTCTCTTGATGAAAACATCGATGCATTG 2196
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 28 ACATCTTCAAGGCAGTATGAAACAACGGAGCCTTCTCTTGATGAAAACATTGATGCATTG 87
Query 2197 CTTGAGGAGGAAGAGGCCTTAATTACAGCGCACAGAAAAGAGATCGAGGATACAATGGAA 2256
|||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 88 CTTGAGGAAGAAGAGACCTTAATTACAGCACACAGAAAAGAGATCGAGGATACAATGGAA 147
Query 2257 ATAGTTCGTGAGGAAATGAAATTACTAGCAGA-GGTGGATCGGCCAGGGAGCATGATTGA 2315
||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 148 ATAGTTCACGAGGAAATGAAATTACTAGC-GAAGGTGGATCGGCCAGGGAGCATGATTGA 206
Query 2316 CAACTATGTTACACAACTGAGTTTTGTGTTGTCCCGTAAAGCAGCTGGTCTCGTAAGTCT 2375
||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 207 CAACTATGTTACACAGCTGAGCTTTGTGTTGTCCCGTAAAGCAGCTGGTCTTGTAAGTCT 266
Query 2376 ACAAGCTCGTCTTGCTAGGTTCCAACACCGTCTGAAAGAACAAGAGATACTTAGCCGGAA 2435
||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 267 TCAAGCCCGTCTTGCTCGGTTCCAACACCGTCTGAAAGAACAGGAGATACTTAGCCGGAA 326
Query 2436 GAGAGTTCCGCGCTAG 2451
||||||||||||||||
Sbjct 327 GAGAGTTCCGCGCTAG 342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121604669832
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5