BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg890684

Length=306
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G15870.1 | Symbols: ATTS1, TS1 | terpene synthase 1 | chr4:9...   139    1e-32


> AT4G15870.1 | Symbols: ATTS1, TS1 | terpene synthase 1 | chr4:9008372-9010947 
REVERSE LENGTH=1797
Length=1797

 Score =  139 bits (75),  Expect = 1e-32
 Identities = 121/141 (86%), Gaps = 11/141 (8%)
 Strand=Plus/Plus

Query  170   GTGACATGAGCAGAGGGTTTGATGTTAATGCCATCGA-GTACTATATAAAGCAATACAAA  228
             ||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct  1502  GTGACATGAGCAGAGGGTTTGATGTTAATGCCATC-ATGTACTATATGAAGCAATACAAA  1560

Query  229   -TTAACCAAGGAGGAAACGATTATACA-G-CTTCACAAA-ATGGTTAGAGACTTGGATAA  284
              ||| || ||||||||||  ||  ||| | ||||| ||| |||| ||| |||||||||| 
Sbjct  1561  GTTA-CCGAGGAGGAAACT-TTC-ACAAGGCTTCA-AAAGATGGCTAGGGACTTGGATAC  1616

Query  285   AACCATGA-CGAGGAGATATT  304
             |||  ||| ||||||||||||
Sbjct  1617  AACTGTGAACGAGGAGATATT  1637



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14175505218


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5