BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890688
Length=2172
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15840.1 | Symbols: | BTB/POZ domain-containing protein | c... 3247 0.0
> AT4G15840.1 | Symbols: | BTB/POZ domain-containing protein |
chr4:8996912-9001039 FORWARD LENGTH=2749
Length=2749
Score = 3247 bits (1758), Expect = 0.0
Identities = 1978/2086 (95%), Gaps = 8/2086 (0%)
Strand=Plus/Plus
Query 91 GATGATGATAATGCCTTTCGCGTTTTAGCTGCTGCTTCTTTTCTTGATCTCCAGGATTTG 150
|||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 481 GATGATGATAATGCCTTTCGTGTTTTAGCTGCTGCTTCTTTTCTTGACCTTCAGGATTTG 540
Query 151 TGTGCCATATGCACCGATTTTATTATTTCTGAGCTGAGGACTTCAAACTTCCTGGCATAT 210
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGTGCGATATGCACTGATTTTATTATTTCTGAGCTGAGGACTTCAAACTTCCTGGCATAT 600
Query 211 CAGGTGTTTGCTGAGAGTCAAGACTATGGCATACATGGAGAACGTGTAAGGAATGCTTGC 270
||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 601 CAGGTATTTGCTGAGAGCCAAGACTATGGCATTCATGGAGAACGTGTAAGGAATGCTTGC 660
Query 271 TGGGGTTATCTCTGTCAAAGTGGTGCCGTGGAACTGAGAGAGATGCTGCCGAAACTCTCT 330
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGGGGTTATCTCTGTCAAAGTGGTGCCGTGGAACTGAGAGAGATGCTGCCGAAACTCTCA 720
Query 331 GCACAGACTCTATGTGCATTGCTGACATCTGATGAACTATGGGTGCCTAGTGAAGAAAAA 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GCACAGACTCTATGTGCATTGCTGACATCTGATGAACTATGGGTGCCTAGTGAAGAAAAA 780
Query 391 CGGTTTGAACTGGCATTGTACGCCTTCATAGCAAATGGTGCTCTCTCCAACTCAGAAT-A 449
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
Sbjct 781 CGGTTTGAACTGGCATTGTACGCCTTCATAGCAAATAGTGCTCTCTCCAACTCAG-ATCA 839
Query 450 TTCCAATCAAGATTCCAGGTTTGAGAGAGATACAAGCTTTCCTTTGGATTCTGCTACATC 509
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||
Sbjct 840 TTCCAATCAAGATTCCAGATTTGAGAGAGAGACAAGCTTTCCTTTGGATTCTGCTATATC 899
Query 510 TAAGGGGAAAAGTGTGATGGATGATTTCTCTTTCAAGAGTTTGGACTGTAAATTAGGTCA 569
|||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 900 AAAGGGGAAAAATGTGATGGATGATTTCTCTTTCAGGAGTTTGGACTGTAAGTTAGGTCA 959
Query 570 TTTAGATATAGAAGACGACCTAAGAGATGCTAGTGATGACGTGATTGTTCCACTCGCAGA 629
|||||||||||||| ||||||| |||||||||||||||| ||||||||||||||| ||||
Sbjct 960 TTTAGATATAGAAGCCGACCTACGAGATGCTAGTGATGATGTGATTGTTCCACTCACAGA 1019
Query 630 AGGTGTTATTGATTTCCAAAGAGGTGTTTCTGGTTCAAACCTCGTGTTTCAGCAATCTCC 689
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1020 AGGTGTTATTGATTTCCAAAGAGGTGTTTCAGGTTCAAACCTCGTGTTTCAGCAATCTTC 1079
Query 690 TAACTCACAAAC-AAGTTTTGGTCGTACTTGCACCAGTGTTGTTGATAAAACAGAAGGCA 748
|||||||||||| || |||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1080 TAACTCACAAACGAA-TTTTGGTCGTCCTTGCACCAGTGTTGTTGATAAGACAGAAGGCA 1138
Query 749 GTGGGGTGGCAATTGAAGGACCTTCTGAAGATGCATACCATTTGAGTAATGATAGTTGGT 808
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1139 GTGTGGTGGCAATTGAAGGACCTTCTGAAGAAGCATACCATTTGAGTAATGATAGTTGGT 1198
Query 809 TGTCAGGAGCAGACTCTAGAAATTCTCCTACTTTAGGTTCTTCTTCTGATGGTTTTGTGG 868
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct 1199 TATCAGGAGCAGACTCTAGAAATTCTCCTACTTTAGGTTCTTCCTCTGATGGTTTCGTTG 1258
Query 869 TCAGTGAATGGGGAAACTGTGGTGTTTCTGCTCTAACCTGGGGTGGGCGGGTTGTGGGGA 928
||| ||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1259 TCAATGAGTGGGGTAACTGTGGTGTTTCTGCTCTAACCTGGGGTGGACGGGTTGTGGGGA 1318
Query 929 CAAGGCAGGGTACAGGCTCTGGTAAAGGAAAATATGGATTTACTGAGGAAGAATACAGTG 988
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CAAGACAGGGTACAGGCTCTGTTAAAGGAAAATATGGATTTACTGAGGAAGAATACAGTG 1378
Query 989 CATTTGTAAACACTTTTGAAGGTGGTTCACTTCTGTATTGCAATATGTCTTTTGAAATAC 1048
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CATTTGTCAACACTTTTGAAGGTGGTTCACTTCTGTATTGCAATATGTCTTTTGAAATAC 1438
Query 1049 TATTGAACGCAAGAAAAGAACTTGAAGAGTTGGGTTTCCCTTGTAAAGCCGTGAATGATG 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TATTGAACGCAAGAAAAGAACTTGAAGAGTTGGGTTTCCCTTGTAAAGCCGTGAATGATG 1498
Query 1109 GCCTTTGGTTGCAGATGCTTCTCAGTCAGAGGGTGCAGGAAGTTGCTGCCAACACATGCA 1168
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1499 GCCTCTGGTTGCAGATGCTTCTCAGTCAAAGGGTGCAGGAAGTTGCTGCCAACACATGCA 1558
Query 1169 AAAGGTGTTGCCTTATTAGTGTTGCTTGCGCGTGTAAACAGGGATTTGGGGTATCACATG 1228
|||||||||||||||| ||| |||| || ||||||||||| ||||||||||| |||||||
Sbjct 1559 AAAGGTGTTGCCTTATCAGTATTGCATGTGCGTGTAAACAAGGATTTGGGGTTTCACATG 1618
Query 1229 GTGCAACCTTTAACAATTATTATTGCCAAGACAATGTGCAGAACAATATGATGGGAGACA 1288
|||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1619 GTGCAACCTTCAACAATTATTATTGCCAAGAAAACGTGCAGAACAATATGATGGGAGACA 1678
Query 1289 TGGAAAATGTCTATGTGACGGAATCTTCTCAAGGAGAAGGAATAGGCATCTTTAAGCCTG 1348
|||| || || |||||| |||||||||||||||| || || |||||||||||||||||||
Sbjct 1679 TGGATAACGTATATGTGCCGGAATCTTCTCAAGGCGATGGGATAGGCATCTTTAAGCCTG 1738
Query 1349 TCAGGATCAGTGTGAGGGGACAACACATTGATGGACTTGCAGGCATTGGATGCGAAGCTA 1408
||||||||||||| || |||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1739 TCAGGATCAGTGTCAGAGGACAACATATTGATGGACTTGCCGGCATTGGATGCGAAGCTA 1798
Query 1409 CATTTGTGCCACCACCTGCTTGGCCTCCTACACCTTTTGTGTACTCTCGTGTCCCTATTA 1468
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1799 CATTTGTACCACCACCTGCTTGGCCTCCTACTCCTTTTGTGTACTCTCGTGTCCCTATTA 1858
Query 1469 ACAGAAATGGTCAGCAATCTATTGCTAGTGATGGTTGTGAAGGTAGAATTGACCAGAGTG 1528
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1859 ACAGAAATGGTCAGCAATCTATTGCTAGTGATGGTTCTGAAGGTAGAATTGATCAGAGTG 1918
Query 1529 GAGAAATTTCAAAAGACGG-CTTGACAGCTCTGGTTGGGCTGAGCCAAGGGACAAGCGGT 1587
|||||||||||||||| || || ||||||||| |||||| ||||||||||||||||||||
Sbjct 1919 GAGAAATTTCAAAAGATGGGCT-GACAGCTCTTGTTGGGTTGAGCCAAGGGACAAGCGGT 1977
Query 1588 GTTGGTAATAATCCTCGTGGTGATCAAACTGAAGGAGGGCGTGGCAGTGGAGCTACTGTT 1647
|||||||| ||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 1978 GTTGGTAACAATCCTCGTGGAGAACAAACTGAGGGAGGGCGTGGCAGTGGAGCTACTGTT 2037
Query 1648 GGAATGTCTGAACCAAAGGAATCTTCAGTGGGGACTGAGTGGGAGAACGCAAGTTGTACC 1707
|||||||| |||||||||||| ||||||| || |||||||||||||||||||||||||||
Sbjct 2038 GGAATGTCAGAACCAAAGGAACCTTCAGTAGGTACTGAGTGGGAGAACGCAAGTTGTACC 2097
Query 1708 ATATCACTCGACACAAGGACACCTTTGTGTCACTTTCCTCCCTTTCGTTTTGGAGTTGAA 1767
|||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2098 ATATCACTTGATACAAAGACACCTTTGTGTCACTTTCCTCCCTTTCGTTTTGGAGTTGAA 2157
Query 1768 TTTGAGGATGTCCATAGGCTCGCTAATGGTCATGTGGAGCATTCTCCTGAGTTCTTCTAT 1827
||||| |||||||| || |||||||| |||||||| |||||||||||||| |||||||||
Sbjct 2158 TTTGAAGATGTCCACAGACTCGCTAACGGTCATGTAGAGCATTCTCCTGAATTCTTCTAT 2217
Query 1828 GCTGGTTCTCTCTGGAAGATTAGCATTCAGGCGTTCAATGATGAAGATCCTCAAGGACGT 1887
||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 2218 GCTGGTTCTCTGTGGAAGATTAGCATACAGGCTTTCAATGATGAAGATCCTCAAGGACGC 2277
Query 1888 CGAACTATTGGATTGTTTCTTCACCGCCGCAAAGCAGAGATAGTGGATTCAGTAAGGAAG 1947
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2278 CGAACTATCGGATTATTTCTTCACCGCCGCAAAGCAGAGATAGTGGATTCAGTAAGGAAG 2337
Query 1948 GTCCATGTTTACATAGATCCTCGTGACAAAGTGACTGCACGTTACCAGCTTATCTGCCCA 2007
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2338 GTCCATGTTTACATAGATCCTCGTGACAAAGTGACTGCACGTTACCAGCTTATCTGCCCG 2397
Query 2008 TCGAAAAGAGAAGTGATGTTGTTTGGGAGCTTTAAACAGAGAGGAACTCTTCTGCCTAAA 2067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2398 TCGAAAAGAGAAGTGATGTTGTTTGGGAGCTTTAAACAGAGAGGAACTCTTCTGCCTAAA 2457
Query 2068 GCCCCCAAAGGGTGGGGATGGCGCACCGCACTGCTCTTTGATGAGCTCTCTGAACTTTTG 2127
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 2458 GCTCCCAAAGGGTGGGGATGGCGCACCGCACTGCTCTTTGATGAGCTCTCGGAACTTCTC 2517
Query 2128 CAGAACGGTGCGT-TAAGAGTAGCTGCTGTGGTTCAACTGGTTTAG 2172
||||||||||| | | ||||| |||||||| ||||| || ||||||
Sbjct 2518 CAGAACGGTGC-TCTGAGAGTGGCTGCTGTTGTTCAGCTCGTTTAG 2562
Score = 141 bits (76), Expect = 3e-32
Identities = 86/91 (95%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 1 ATGCTCCAAGGTCCATGGAAAGAAGCAAGCTCTCCGGTTGTGAACTTACTTGTGGATGAT 60
||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 355 ATGCTGCAAGGTCCATGGAAAGAAGCTAGCTCTCCTGTTGTGAACTTACTTGTGGATGAT 414
Query 61 AAAAATGTTAATGGAGATGCTATTTCTGTTG 91
||||||||||||||||| || ||||||||||
Sbjct 415 AAAAATGTTAATGGAGACGCAATTTCTGTTG 445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107730369570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5