BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890692
Length=273
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15802.1 | Symbols: HSBP, AtHSBP | heat shock factor binding... 283 5e-76
> AT4G15802.1 | Symbols: HSBP, AtHSBP | heat shock factor binding
protein | chr4:8986615-8988452 REVERSE LENGTH=623
Length=623
Score = 283 bits (153), Expect = 5e-76
Identities = 237/275 (86%), Gaps = 16/275 (6%)
Strand=Plus/Plus
Query 1 ATGGATGGTCATGATTCTGAGGATACTAAGCAGAGCACTGCTGATATGACTGCTTTTGTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 ATGGATGGTCATGATTCTGAGGATACTAAGCAGAGCACTGCTGATATGACTGCTTTTGTC 173
Query 61 CAAAATCTTCTCCAACAGATGGTAGttttttttGGCTTTTATGTCTTCTTAGGCCTTGGA 120
|||||||||||||| ||||| | | || || | | | | | | |||
Sbjct 174 CAAAATCTTCTCCAGCAGAT-GCA----AACCAGG-TTCCA-G---AC-AATG--TCGGA 220
Query 121 ATTGTTACTTCA-ATAG-TTGATGACATGGGAGGCAGAATCAATGAACTGGAGCAAAGCA 178
| | | ||| | || |||||||||||||||||||||||||||| |||||||||||||
Sbjct 221 CTCCAT-CATCACAAAGATTGATGACATGGGAGGCAGAATCAATGAGCTGGAGCAAAGCA 279
Query 179 TCAATGATCTAAGAGCCGAGATGGGAGTAGAAGGCACTCCTCCTCCAGCCTCCAAATCAG 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 TCAATGATCTAAGAGCCGAGATGGGAGTAGAAGGCACTCCTCCTCCAGCCTCCAAATCAG 339
Query 239 GCGATGAACCCAAAACACCCGCTAGTTCCACTTAA 273
||||||||||||||||||| ||||||||| |||||
Sbjct 340 GCGATGAACCCAAAACACCGGCTAGTTCCTCTTAA 374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12516669501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5