BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890694
Length=435
Score E
Sequences producing significant alignments: (Bits) Value
AT4G15790.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 678 0.0
> AT4G15790.1 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: chloroplast; EXPRESSED IN:
21 plant structures; EXPRESSED DURING: 13 growth stages; Has
411 Blast hits to 380 proteins in 121 species: Archae - 4;
Bacteria - 107; Metazoa - 85; Fungi - 29; Plants - 59; Viruses
- 0; Other Eukaryotes - 127 (source: NCBI BLink). | chr4:8982183-8984210
FORWARD LENGTH=792
Length=792
Score = 678 bits (367), Expect = 0.0
Identities = 420/444 (95%), Gaps = 9/444 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGACCAAACCTCCGATTCAACA---------GCTCCTCTCTCCGTCTCTTCTCCT 51
||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 208 ATGGCGGACCAAACCTCCGATTCAACATCTCCCGTGGCTCCTCTCTCCGTATCTTCTCCT 267
Query 52 ACTGCTCCTAAGAAAGATAATACCAATCCTGTTGATTCGAAGCTCACGGAATTGAATGAA 111
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 ACTGCTACTAAGAAAGATAATACCAATCCTGTTGATTCGAAGCTCACGGAATTGAATGAA 327
Query 112 TCAAGAGCTGAGTTGCTAAACAGGATCCAGAATCTGAAACAGGACTTGCAAAGTTGGAGA 171
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 TCAAGGGCTGAGTTACTAAACAGGATCCAGAATCTGAAACAGGACTTGCAAAGTTGGAGA 387
Query 172 GGTAAATTGGACACACAAGTTAAAGTCTACCGTGAGGAGCTCTCTGGGCTAAAGAAGACT 231
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 GGTAAATTGGACACTCAAGTTAAAGTCTACCGTGAGGAGCTCTCTGGGCTAAAGAAGACT 447
Query 232 CTGAATCTTGAAGTTGAGCAGCTTCGTGAGGAATTCAAAGATCTGAAAACCACCTTAAAT 291
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 448 CTGAATCTTGAAGTTGAGCAGCTTCGTGAGGAATTCAAAGATCTGAAAACTACCTTGAAT 507
Query 292 CAGCAGCAAGATGATGTTTCTGCTAGCCTGAAAAGCTTAGGCCTACAAGATTCAAAAGAG 351
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 508 CAACAGCAAGATGATGTTTCCGCTAGCCTGAAAAGCTTAGGCCTACAAGATTCAAAAGAG 567
Query 352 CAAATGGATATGAGAAGTGAGGTGACAGAAGAGAAAGTGGAAGCTCTATCGACTGATGAC 411
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 CAAATTGATAAGAGAAGTGAGGTGACAGAAGAGAAAGTGGAAGCTCTATCGACTGATGAT 627
Query 412 AATGCGAAAGCAGCAGAGCATTAG 435
||||| |||| |||||| ||||||
Sbjct 628 AATGCCAAAGAAGCAGAACATTAG 651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20660044839
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5