BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg890697 Length=408 Score E Sequences producing significant alignments: (Bits) Value AT5G44750.2 | Symbols: REV1, ATREV1 | DNA-directed DNA polymera... 178 4e-44 > AT5G44750.2 | Symbols: REV1, ATREV1 | DNA-directed DNA polymerases | chr5:18052608-18060169 FORWARD LENGTH=3841 Length=3841 Score = 178 bits (96), Expect = 4e-44 Identities = 177/213 (83%), Gaps = 18/213 (8%) Strand=Plus/Plus Query 188 AGTTGAGAGTTGGGA-GCATT-GGAGCATTTCCTACCCACATGG-GACAACAGTCATCAT 244 ||||||||| | || | ||| |||||||||||| | |||| || ||||||||||||||| Sbjct 2838 AGTTGAGAGCT--GACGTATTGGGAGCATTTCCTTCACACA-GGAGACAACAGTCATCAT 2894 Query 245 CAGATGTTCCCAAG-A-A-----A-----CAAGATGAGGAGTCGATAGATATAAAGGGCA 292 |||||||||||||| | | | ||||||||||| | |||||| ||||||||| Sbjct 2895 CAGATGTTCCCAAGGAGACTTGTAAGAAACAAGATGAGGAACCAATAGATTTAAAGGGCA 2954 Query 293 CTAAGAATGAGACTGGATTCTCATGTAGCTCTCTCTGGTTTGGGAATCCTCCTATTTGGA 352 || ||||||||| |||||| |||| ||||||||| |||||||||||||||||| |||||| Sbjct 2955 CTGAGAATGAGATTGGATTATCATTTAGCTCTCTTTGGTTTGGGAATCCTCCTCTTTGGA 3014 Query 353 CATAGAAGTTCAAACTTTGGGGCAATTGTACTA 385 || ||||||||||| || | ||||||||||||| Sbjct 3015 CAGAGAAGTTCAAAGTTAGTGGCAATTGTACTA 3047 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19302815616 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5