BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg890697
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44750.2 | Symbols: REV1, ATREV1 | DNA-directed DNA polymera... 178 4e-44
> AT5G44750.2 | Symbols: REV1, ATREV1 | DNA-directed DNA polymerases
| chr5:18052608-18060169 FORWARD LENGTH=3841
Length=3841
Score = 178 bits (96), Expect = 4e-44
Identities = 177/213 (83%), Gaps = 18/213 (8%)
Strand=Plus/Plus
Query 188 AGTTGAGAGTTGGGA-GCATT-GGAGCATTTCCTACCCACATGG-GACAACAGTCATCAT 244
||||||||| | || | ||| |||||||||||| | |||| || |||||||||||||||
Sbjct 2838 AGTTGAGAGCT--GACGTATTGGGAGCATTTCCTTCACACA-GGAGACAACAGTCATCAT 2894
Query 245 CAGATGTTCCCAAG-A-A-----A-----CAAGATGAGGAGTCGATAGATATAAAGGGCA 292
|||||||||||||| | | | ||||||||||| | |||||| |||||||||
Sbjct 2895 CAGATGTTCCCAAGGAGACTTGTAAGAAACAAGATGAGGAACCAATAGATTTAAAGGGCA 2954
Query 293 CTAAGAATGAGACTGGATTCTCATGTAGCTCTCTCTGGTTTGGGAATCCTCCTATTTGGA 352
|| ||||||||| |||||| |||| ||||||||| |||||||||||||||||| ||||||
Sbjct 2955 CTGAGAATGAGATTGGATTATCATTTAGCTCTCTTTGGTTTGGGAATCCTCCTCTTTGGA 3014
Query 353 CATAGAAGTTCAAACTTTGGGGCAATTGTACTA 385
|| ||||||||||| || | |||||||||||||
Sbjct 3015 CAGAGAAGTTCAAAGTTAGTGGCAATTGTACTA 3047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19302815616
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5