BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg890707

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G15735.1 | Symbols: SCRL10 | SCR-like 10 | chr4:8963041-8963...   505    1e-142
  AT2G05117.1 | Symbols: SCRL9 | SCR-like 9 | chr2:1838592-183901...   113    9e-25 


> AT4G15735.1 | Symbols: SCRL10 | SCR-like 10 | chr4:8963041-8963583 
FORWARD LENGTH=436
Length=436

 Score =  505 bits (273),  Expect = 1e-142
 Identities = 308/325 (95%), Gaps = 2/325 (1%)
 Strand=Plus/Plus

Query  1    ATGAAGGTTGCGGCAATCTTTTTGGCTTCTTGTGTCCTTTTCTCTCTTATCCCCACCCAC  60
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  45   ATGAAGGTTGTGGCAATCTTTTTGGCTTCTTGTGTCCTTTTCTCTCTTATCCCCACCCAC  104

Query  61   TTATCACATGAAGAACCAACGGTTGCACCAACAGAAGAACTAATGTTTGCACCAATG-AA  119
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||
Sbjct  105  TTATCACATGAAGAACCAAAGGTTGCACCAACAGAAGAACTAATGTTTGCACCAA-GCAA  163

Query  120  GGAACCAAAGTACTGTCGTTCGAGACAAGTGTTTGATGGATCATGCACAGACAGAGGCAG  179
              |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  164  TCAACCAAGGTACTGTCGTTCGAGACAAGTGTTTGATGGATCATGCACAGACAGAGGCAC  223

Query  180  TCCACGCATGACTTGTTTCCTTGATTTCTTGGGTGCACGAAGTGCAAGTGAGATGCCTAA  239
            |||||||| ||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct  224  TCCACGCACGACTTGTTTCCTTGACTTCTTAGGTGCGCGAAGTGCAAGTGAGATGCCTAA  283

Query  240  GAACTGCAATTGTACTCCTCAGCCCAATAACAAGCGTCTTTGTGAATGTTCAGTTATTTG  299
            ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  284  GAACTGCGATTGTACCCCTCAGCCCAATAACAAGCGTCTTTGTGAATGTTCAGTTATTTG  343

Query  300  CACCGATTGTTGTATACATAATTAA  324
            ||||||||||||| || | ||||||
Sbjct  344  CACCGATTGTTGTGTAAAAAATTAA  368


> AT2G05117.1 | Symbols: SCRL9 | SCR-like 9 | chr2:1838592-1839014 
REVERSE LENGTH=273
Length=273

 Score =  113 bits (61),  Expect = 9e-25
 Identities = 73/79 (92%), Gaps = 0/79 (0%)
 Strand=Plus/Plus

Query  1   ATGAAGGTTGCGGCAATCTTTTTGGCTTCTTGTGTCCTTTTCTCTCTTATCCCCACCCAC  60
           ||||||||||  | ||||||||||||||||||||||||||||||||||||||   |||||
Sbjct  1   ATGAAGGTTGAAGTAATCTTTTTGGCTTCTTGTGTCCTTTTCTCTCTTATCCATGCCCAC  60

Query  61  TTATCACATGAAGAACCAA  79
           |||||||||||||||||||
Sbjct  61  TTATCACATGAAGAACCAA  79



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15080324700


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5